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@ESR-NZ

PHF Science - New Zealand Institute for Public Health and Forensic Science

PHF Science is the New Zealand Institute for Public Health and Forensic Science that specialises in science relating to people and communities.

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  1. human_genomics_pipeline human_genomics_pipeline Public

    A Snakemake workflow to process single samples or cohorts of Illumina paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.

    Python 33 22

  2. covid_in_wastewater covid_in_wastewater Public

    Quantitative data about how much SARS-CoV2 virus is found in New Zealand's wastewater

    21 5

  3. NZ_COVID19_Data NZ_COVID19_Data Public

    13 5

  4. nz-sars-cov2-variants nz-sars-cov2-variants Public

    Data on prevalence of variants of concern in Aotearoa New Zealand

    11 5

  5. vcf_annotation_pipeline vcf_annotation_pipeline Public

    A Snakemake workflow to filter, annotate and prepare variant call format (VCF) data for scout using GATK4, SnpSift, VEP and genmod. Designed to be used after human_genomics_pipeline.

    Python 8 6

  6. NZ_SARS-CoV-2_genomics NZ_SARS-CoV-2_genomics Public

    Shell 6 2

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