Documentation

Gemfile

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+source 'https://rubygems.org'
+gem 'github-pages', group: :jekyll_plugins
+
+# Add just-the-docs theme
+gem 'just-the-docs'
+
+# Add spaceship to have mathjax
+gem "jekyll-spaceship"

Gemfile.lock

@@ -0,0 +1,280 @@
+GEM
+  remote: https://rubygems.org/
+  specs:
+    activesupport (7.1.3.3)
+      base64
+      bigdecimal
+      concurrent-ruby (~> 1.0, >= 1.0.2)
+      connection_pool (>= 2.2.5)
+      drb
+      i18n (>= 1.6, < 2)
+      minitest (>= 5.1)
+      mutex_m
+      tzinfo (~> 2.0)
+    addressable (2.8.6)
+      public_suffix (>= 2.0.2, < 6.0)
+    base64 (0.2.0)
+    bigdecimal (3.1.8)
+    coffee-script (2.4.1)
+      coffee-script-source
+      execjs
+    coffee-script-source (1.12.2)
+    colorator (1.1.0)
+    commonmarker (0.23.10)
+    concurrent-ruby (1.3.1)
+    connection_pool (2.4.1)
+    dnsruby (1.72.1)
+      simpleidn (~> 0.2.1)
+    drb (2.2.1)
+    em-websocket (0.5.3)
+      eventmachine (>= 0.12.9)
+      http_parser.rb (~> 0)
+    ethon (0.16.0)
+      ffi (>= 1.15.0)
+    eventmachine (1.2.7)
+    execjs (2.9.1)
+    faraday (2.8.1)
+      base64
+      faraday-net_http (>= 2.0, < 3.1)
+      ruby2_keywords (>= 0.0.4)
+    faraday-net_http (3.0.2)
+    ffi (1.17.0)
+    forwardable-extended (2.6.0)
+    gemoji (4.1.0)
+    github-pages (231)
+      github-pages-health-check (= 1.18.2)
+      jekyll (= 3.9.5)
+      jekyll-avatar (= 0.8.0)
+      jekyll-coffeescript (= 1.2.2)
+      jekyll-commonmark-ghpages (= 0.4.0)
+      jekyll-default-layout (= 0.1.5)
+      jekyll-feed (= 0.17.0)
+      jekyll-gist (= 1.5.0)
+      jekyll-github-metadata (= 2.16.1)
+      jekyll-include-cache (= 0.2.1)
+      jekyll-mentions (= 1.6.0)
+      jekyll-optional-front-matter (= 0.3.2)
+      jekyll-paginate (= 1.1.0)
+      jekyll-readme-index (= 0.3.0)
+      jekyll-redirect-from (= 0.16.0)
+      jekyll-relative-links (= 0.6.1)
+      jekyll-remote-theme (= 0.4.3)
+      jekyll-sass-converter (= 1.5.2)
+      jekyll-seo-tag (= 2.8.0)
+      jekyll-sitemap (= 1.4.0)
+      jekyll-swiss (= 1.0.0)
+      jekyll-theme-architect (= 0.2.0)
+      jekyll-theme-cayman (= 0.2.0)
+      jekyll-theme-dinky (= 0.2.0)
+      jekyll-theme-hacker (= 0.2.0)
+      jekyll-theme-leap-day (= 0.2.0)
+      jekyll-theme-merlot (= 0.2.0)
+      jekyll-theme-midnight (= 0.2.0)
+      jekyll-theme-minimal (= 0.2.0)
+      jekyll-theme-modernist (= 0.2.0)
+      jekyll-theme-primer (= 0.6.0)
+      jekyll-theme-slate (= 0.2.0)
+      jekyll-theme-tactile (= 0.2.0)
+      jekyll-theme-time-machine (= 0.2.0)
+      jekyll-titles-from-headings (= 0.5.3)
+      jemoji (= 0.13.0)
+      kramdown (= 2.4.0)
+      kramdown-parser-gfm (= 1.1.0)
+      liquid (= 4.0.4)
+      mercenary (~> 0.3)
+      minima (= 2.5.1)
+      nokogiri (>= 1.13.6, < 2.0)
+      rouge (= 3.30.0)
+      terminal-table (~> 1.4)
+    github-pages-health-check (1.18.2)
+      addressable (~> 2.3)
+      dnsruby (~> 1.60)
+      octokit (>= 4, < 8)
+      public_suffix (>= 3.0, < 6.0)
+      typhoeus (~> 1.3)
+    html-pipeline (2.14.3)
+      activesupport (>= 2)
+      nokogiri (>= 1.4)
+    http_parser.rb (0.8.0)
+    i18n (1.14.5)
+      concurrent-ruby (~> 1.0)
+    jekyll (3.9.5)
+      addressable (~> 2.4)
+      colorator (~> 1.0)
+      em-websocket (~> 0.5)
+      i18n (>= 0.7, < 2)
+      jekyll-sass-converter (~> 1.0)
+      jekyll-watch (~> 2.0)
+      kramdown (>= 1.17, < 3)
+      liquid (~> 4.0)
+      mercenary (~> 0.3.3)
+      pathutil (~> 0.9)
+      rouge (>= 1.7, < 4)
+      safe_yaml (~> 1.0)
+    jekyll-avatar (0.8.0)
+      jekyll (>= 3.0, < 5.0)
+    jekyll-coffeescript (1.2.2)
+      coffee-script (~> 2.2)
+      coffee-script-source (~> 1.12)
+    jekyll-commonmark (1.4.0)
+      commonmarker (~> 0.22)
+    jekyll-commonmark-ghpages (0.4.0)
+      commonmarker (~> 0.23.7)
+      jekyll (~> 3.9.0)
+      jekyll-commonmark (~> 1.4.0)
+      rouge (>= 2.0, < 5.0)
+    jekyll-default-layout (0.1.5)
+      jekyll (>= 3.0, < 5.0)
+    jekyll-feed (0.17.0)
+      jekyll (>= 3.7, < 5.0)
+    jekyll-gist (1.5.0)
+      octokit (~> 4.2)
+    jekyll-github-metadata (2.16.1)
+      jekyll (>= 3.4, < 5.0)
+      octokit (>= 4, < 7, != 4.4.0)
+    jekyll-include-cache (0.2.1)
+      jekyll (>= 3.7, < 5.0)
+    jekyll-mentions (1.6.0)
+      html-pipeline (~> 2.3)
+      jekyll (>= 3.7, < 5.0)
+    jekyll-optional-front-matter (0.3.2)
+      jekyll (>= 3.0, < 5.0)
+    jekyll-paginate (1.1.0)
+    jekyll-readme-index (0.3.0)
+      jekyll (>= 3.0, < 5.0)
+    jekyll-redirect-from (0.16.0)
+      jekyll (>= 3.3, < 5.0)
+    jekyll-relative-links (0.6.1)
+      jekyll (>= 3.3, < 5.0)
+    jekyll-remote-theme (0.4.3)
+      addressable (~> 2.0)
+      jekyll (>= 3.5, < 5.0)
+      jekyll-sass-converter (>= 1.0, <= 3.0.0, != 2.0.0)
+      rubyzip (>= 1.3.0, < 3.0)
+    jekyll-sass-converter (1.5.2)
+      sass (~> 3.4)
+    jekyll-seo-tag (2.8.0)
+      jekyll (>= 3.8, < 5.0)
+    jekyll-sitemap (1.4.0)
+      jekyll (>= 3.7, < 5.0)
+    jekyll-spaceship (0.5.3)
+      jekyll (>= 3.6, < 5.0)
+      nokogiri (~> 1.6)
+      rainbow (~> 3.0)
+    jekyll-swiss (1.0.0)
+    jekyll-theme-architect (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-cayman (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-dinky (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-hacker (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-leap-day (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-merlot (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-midnight (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-minimal (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-modernist (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-primer (0.6.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-github-metadata (~> 2.9)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-slate (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-tactile (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-theme-time-machine (0.2.0)
+      jekyll (> 3.5, < 5.0)
+      jekyll-seo-tag (~> 2.0)
+    jekyll-titles-from-headings (0.5.3)
+      jekyll (>= 3.3, < 5.0)
+    jekyll-watch (2.2.1)
+      listen (~> 3.0)
+    jemoji (0.13.0)
+      gemoji (>= 3, < 5)
+      html-pipeline (~> 2.2)
+      jekyll (>= 3.0, < 5.0)
+    just-the-docs (0.8.2)
+      jekyll (>= 3.8.5)
+      jekyll-include-cache
+      jekyll-seo-tag (>= 2.0)
+      rake (>= 12.3.1)
+    kramdown (2.4.0)
+      rexml
+    kramdown-parser-gfm (1.1.0)
+      kramdown (~> 2.0)
+    liquid (4.0.4)
+    listen (3.9.0)
+      rb-fsevent (~> 0.10, >= 0.10.3)
+      rb-inotify (~> 0.9, >= 0.9.10)
+    mercenary (0.3.6)
+    minima (2.5.1)
+      jekyll (>= 3.5, < 5.0)
+      jekyll-feed (~> 0.9)
+      jekyll-seo-tag (~> 2.1)
+    minitest (5.23.1)
+    mutex_m (0.2.0)
+    nokogiri (1.15.6-x86_64-linux)
+      racc (~> 1.4)
+    octokit (4.25.1)
+      faraday (>= 1, < 3)
+      sawyer (~> 0.9)
+    pathutil (0.16.2)
+      forwardable-extended (~> 2.6)
+    public_suffix (5.0.5)
+    racc (1.8.0)
+    rainbow (3.1.1)
+    rake (13.2.1)
+    rb-fsevent (0.11.2)
+    rb-inotify (0.11.1)
+      ffi (~> 1.0)
+    rexml (3.2.8)
+      strscan (>= 3.0.9)
+    rouge (3.30.0)
+    ruby2_keywords (0.0.5)
+    rubyzip (2.3.2)
+    safe_yaml (1.0.5)
+    sass (3.7.4)
+      sass-listen (~> 4.0.0)
+    sass-listen (4.0.0)
+      rb-fsevent (~> 0.9, >= 0.9.4)
+      rb-inotify (~> 0.9, >= 0.9.7)
+    sawyer (0.9.2)
+      addressable (>= 2.3.5)
+      faraday (>= 0.17.3, < 3)
+    simpleidn (0.2.3)
+    strscan (3.1.0)
+    terminal-table (1.8.0)
+      unicode-display_width (~> 1.1, >= 1.1.1)
+    typhoeus (1.4.1)
+      ethon (>= 0.9.0)
+    tzinfo (2.0.6)
+      concurrent-ruby (~> 1.0)
+    unicode-display_width (1.8.0)
+
+PLATFORMS
+  x86_64-linux
+
+DEPENDENCIES
+  github-pages
+  jekyll-spaceship
+  just-the-docs
+
+BUNDLED WITH
+   2.4.22

_config.yml

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+title: VERTEX-CFD
+description: VERTEX-CFD is a performance portable software package for computational fluid dynamics (CFD) simulations on CPU or GPU architectures.
+baseurl: "/VERTEX-CFD"
+url: "https://ORNL.github.io"
+repository: ORNL/VERTEX-CFD
+
+#show_downloads: true
+#google_analytics:
+#theme: jekyll-theme-minimal
+
+permalink: pretty
+
+remote_theme: just-the-docs/just-the-docs
+
+plugins:
+  - jekyll-remote-theme
+  - jekyll-seo-tag
+  - jekyll-feed
+
+compress_html:
+  blanklines: true
+
+# Override purple (default) to ORNL green
+color_scheme: ornl_green
+
+logo: docs/figures/vertex_cfd_heated_flow_logo.png
+
+# External navigation links
+nav_external_links:
+  - title: VERTEX-CFD on GitHub
+    url: "https://github.com/ORNL/VERTEX-CFD"
+
+# Aux links for the upper right navigation
+aux_links:
+  "VERTEX-CFD on GitHub":
+    - "https://github.com/ORNL/VERTEX-CFD"
+
+# Makes Aux links open in a new tab. Default is false
+aux_links_new_tab: false
+
+# Enable callouts in markdown    
+callouts_level: quiet # or loud
+callouts:
+  highlight:
+    color: yellow
+  important:
+    title: Important
+    color: blue
+  new:
+    title: New
+    color: green
+  note:
+    title: Note
+    color: purple
+  warning:
+    title: Warning
+    color: red
+  custom:
+    title: Note
+    color: ornl_green
+
+sass:
+  custom_stylesheet: _sass/custom/custom.scss

_includes/head_custom.html

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+{% if page.usemathjax %}
+<script type="text/x-mathjax-config">
+  MathJax.Hub.Config({
+    TeX: { equationNumbers: { autoNumber: "AMS" } }
+    });
+</script>
+<script type="text/javascript" async
+ src="https://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS_CHTML">
+</script>
+{% endif %}

_sass/color_schemes/ornl_green.scss

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+$ornl-green: #007833;
+$link-color: $ornl-green;
+$btn-primary-color: $ornl-green;
+$sidebar-color: #ffffff;