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PROBLEM

Status: Open.

#229 In adamewing/bamsurgeon;

· phantom679 opened on Mar 17, 2025

[E::bwa_idx_load_from_disk] fail to locate the index files

Status: Open.

#228 In adamewing/bamsurgeon;

· ATCG-ATCG opened on Sep 11, 2024

Bamsurgeon addsnv.py takes 4 hours to add one SNP to a bam file of size 3.1MB ?

Status: Open.

#225 In adamewing/bamsurgeon;

· TrangNg-Th opened on May 14, 2024

"best contig too short to make mutation" / "No good alignment between mutated contig and original, aborting mutation!" Errors

Status: Open.

#223 In adamewing/bamsurgeon;

· FelipeAze opened on Aug 7, 2023

Bamsurgeon goes silent (does not finish) on high coverage small panel bam file

Status: Open.

#217 In adamewing/bamsurgeon;

· ranjit58 opened on Jan 10, 2023

Samtools view issue

Status: Open.

#214 In adamewing/bamsurgeon;

· lukatop opened on Aug 25, 2022

Add SV for Single end ONT reads

Status: Open.

#210 In adamewing/bamsurgeon;

· saranya-work opened on Aug 8, 2022

Publish docker image on Github Container Registry

Status: Open.

#209 In adamewing/bamsurgeon;

· holtgrewe opened on Jul 6, 2022

outbam

Status: Open.

#208 In adamewing/bamsurgeon;

· pengsl-lab opened on Jul 1, 2022

AttributeError: 'array.array' object has no attribute 'tostring'

Status: Open.

#207 In adamewing/bamsurgeon;

· oliverartz opened on Jun 20, 2022

ValueError: quality and sequence mismatch: 98 != 97

Status: Open.

#204 In adamewing/bamsurgeon;

· mkankain-hruh opened on May 20, 2022

Losing Haplotype information

bug

Status: Open.

#195 In adamewing/bamsurgeon;

· FranziskaSundermann opened on Mar 21, 2022