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1. MALDI-MSI-IMC MALDI-MSI-IMC Public

   Code to integrate MALDI-MSI and Imaging mass cytometry data

   Python 8 2

2. PENGUIN PENGUIN Public

   Rapid and efficient image preprocessing pipeline for multiplexed spatial proteomics. Code to compare several techniques to denoise Imaging Mass cytometry

   Jupyter Notebook 6 1

3. GRIDGEN GRIDGEN Public

   Guided Region Identification based on Density of Genes. Building masks for spatial transcriptomics data

   Python 3 1

4. IMC_analysis_pack IMC_analysis_pack Public

   Software & Workflow for the analysis of imaging mass cytometry data

   R

5. SABR SABR Public

   Workflow for Semi-automated background removal to normalise imaging mass cytometry data

   MATLAB

6. CellCytoLego CellCytoLego Public

   Sequential cell segmentation for IMC data

   Jupyter Notebook