PredPatt Integration and Python 3.12+ Modernization

.github/workflows/ci.yml

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+name: CI
+
+on:
+  push:
+    branches: [ master, main ]
+  pull_request:
+    branches: [ master, main ]
+
+jobs:
+  test:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.12"]
+
+    steps:
+    - uses: actions/checkout@v4
+
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v5
+      with:
+        python-version: ${{ matrix.python-version }}
+
+    - name: Cache pip packages
+      uses: actions/cache@v4
+      with:
+        path: ~/.cache/pip
+        key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt', '**/pyproject.toml') }}
+        restore-keys: |
+          ${{ runner.os }}-pip-
+
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install -e ".[dev]"
+
+    - name: Run tests with pytest (including slow tests)
+      run: |
+        pytest --runslow -v
+
+  lint:
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v4
+
+    - name: Set up Python 3.12
+      uses: actions/setup-python@v5
+      with:
+        python-version: "3.12"
+
+    - name: Cache pip packages
+      uses: actions/cache@v4
+      with:
+        path: ~/.cache/pip
+        key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt', '**/pyproject.toml') }}
+        restore-keys: |
+          ${{ runner.os }}-pip-
+
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install -e ".[dev]"
+
+    - name: Run ruff
+      run: |
+        # Check only for errors (E) and critical failures (F), not style warnings
+        # Exclude tests directory from linting
+        ruff check . --select E,F --exclude tests/
+        # Format check is optional - only fail on critical issues
+        ruff format --check . || true
+
+  type-check:
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v4
+
+    - name: Set up Python 3.12
+      uses: actions/setup-python@v5
+      with:
+        python-version: "3.12"
+
+    - name: Cache pip packages
+      uses: actions/cache@v4
+      with:
+        path: ~/.cache/pip
+        key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt', '**/pyproject.toml') }}
+        restore-keys: |
+          ${{ runner.os }}-pip-
+
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install -e ".[dev]"
+
+    - name: Run mypy
+      run: |
+        mypy decomp
+
+  docs:
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v4
+
+    - name: Set up Python 3.12
+      uses: actions/setup-python@v5
+      with:
+        python-version: "3.12"
+
+    - name: Cache pip packages
+      uses: actions/cache@v4
+      with:
+        path: ~/.cache/pip
+        key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt', '**/pyproject.toml', '**/docs/requirements.txt') }}
+        restore-keys: |
+          ${{ runner.os }}-pip-
+
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        # Install the package first
+        pip install -e .
+        # Then install documentation dependencies
+        pip install -r docs/requirements.txt
+
+    - name: Build documentation
+      run: |
+        cd docs
+        make html

CHANGELOG.md

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+# Changelog
+
+All notable changes to the Decomp project will be documented in this file.
+
+The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
+and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
+
+## [0.3.0] - 2025-07-30
+
+### Added
+- **New PredPatt Integration**: Complete integration of PredPatt semantic role labeling functionality into `decomp.semantics.predpatt` module
+- **Modern Python Support**: Full Python 3.12+ compatibility with updated type hints using union syntax (`|`) and built-in generics
+- **Modern Packaging**: Migration from `setup.py` to `pyproject.toml` with modern build system
+
+### Changed
+- **Type System Modernization**: All type hints updated to Python 3.12+ conventions using `|` union syntax and built-in generics
+- **Documentation**: Comprehensive documentation overhaul with detailed API references and usage examples
+- **Code Quality**: Implementation of ruff and mypy for consistent code formatting and static type checking
+- **Test Suite**: Complete pytest-based test suite with differential testing against original PredPatt implementation
+
+### Technical Details
+- **Module Structure**: New modular architecture with `core`, `extraction`, `parsing`, `rules`, `filters`, and `utils` submodules
+- **Algorithm Fidelity**: Byte-for-byte identical output compatibility with original PredPatt implementation
+- **Dependencies**: Updated to modern versions while maintaining backward compatibility
+
+## [0.2.2] - 2022-06-08
+
+### Fixed
+- **Corpus Loading**: Fixed broken corpus load from JSON functionality
+- **UDS Annotations**: Corrected error in raw UDS-EventStructure annotations processing
+
+### Notes
+- Final release of v0.2.x series before major modernization
+- Maintained compatibility with Universal Decompositional Semantics v2.0 dataset
+
+## [0.2.1] - 2021-04-05
+
+### Fixed
+- **Python 3.9 Compatibility**: Resolved compatibility issues with Python 3.9
+- **Dependency Updates**: Updated dependencies to support newer Python versions
+
+### Notes
+- Part of Universal Decompositional Semantics v2.0 release series
+- Improved cross-platform compatibility
+
+## [0.2.0] - 2021-03-19
+
+### Added
+- **Universal Decompositional Semantics v2.0**: First release supporting UDS 2.0 dataset
+- **Document-Level Graphs**: Support for document-level semantic graph structures
+- **Raw Annotations**: Access to raw annotation data alongside normalized annotations
+- **Advanced Metadata**: Enhanced metadata handling and processing capabilities
+- **Visualization Module**: New `decomp.vis` module for graph visualization and analysis
+- **Enhanced Graph Support**: Improved NetworkX and RDF graph representations
+
+### Changed
+- **Major Version Bump**: Significant architectural changes to support UDS v2.0
+- **API Enhancements**: Extended API surface for document-level processing
+- **Data Format**: Support for both sentence-level and document-level annotation formats
+
+### Technical Details
+- **Graph Structures**: Support for complex document-level semantic relationships
+- **Annotation Pipeline**: Enhanced pipeline for processing raw and normalized annotations
+- **Metadata Schema**: Advanced metadata schema for annotation provenance and confidence
+
+## [0.1.3] - 2020-03-13
+
+### Fixed
+- **RDF Cache**: Fixed RDF cache clearing error that could cause memory issues
+- **Document Attributes**: Added missing document and sentence ID attributes for better tracking
+
+### Added
+- **Improved Tracking**: Better document and sentence identification in corpus processing
+
+### Notes
+- Maintenance release improving stability and debugging capabilities
+- Enhanced corpus navigation and identification features
+
+## [0.1.2] - 2020-01-17
+
+### Fixed
+- **Corpus Construction**: Fixed corpus construction error when using split parameter
+- **Data Splitting**: Resolved issues with train/dev/test split functionality
+
+### Technical Details
+- **Split Parameters**: Corrected handling of data split parameters in corpus initialization
+- **Error Handling**: Improved error messages for corpus construction failures
+
+## [0.1.1] - 2019-10-19
+
+### Fixed
+- **Genericity Annotations**: Fixed copular clause argument linking error in genericity annotations
+- **Argument Linking**: Corrected semantic role assignment for copular constructions
+
+### Technical Details
+- **Linguistic Accuracy**: Improved handling of copular clause structures in semantic annotation
+- **Annotation Quality**: Enhanced accuracy of genericity property assignments
+
+## [0.1.0] - 2019-10-01
+
+### Added
+- **Initial Release**: First major release of the Decomp toolkit
+- **Universal Decompositional Semantics v1.0**: Complete support for UDS v1.0 dataset
+- **Core Framework**: Foundation classes for semantic graph processing
+- **Syntax Integration**: Universal Dependencies syntax integration
+- **Semantic Properties**: Support for multiple semantic annotation types:
+  - Genericity annotations
+  - Factuality annotations  
+  - Protorole annotations
+  - Temporal annotations
+  - Word sense annotations
+- **Graph Representations**: NetworkX and RDF graph format support
+- **Corpus Management**: Tools for loading, processing, and managing UDS corpora
+- **Documentation**: Comprehensive documentation and API reference
+
+### Technical Foundation
+- **Graph Infrastructure**: Core graph processing and manipulation capabilities
+- **Annotation Framework**: Flexible annotation loading and processing system
+- **Type System**: Initial type definitions for semantic structures
+- **Testing Framework**: Basic test suite for core functionality
+
+---
+
+## Release Notes
+
+### Dataset Compatibility
+- **v0.1.x**: Universal Decompositional Semantics v1.0
+- **v0.2.x**: Universal Decompositional Semantics v2.0
+- **v0.3.x**: Universal Decompositional Semantics v2.0 + PredPatt integration
+
+### Python Version Support
+- **v0.1.x - v0.2.x**: Python 3.6+
+- **v0.3.x**: Python 3.12+ (modern type hints and language features)
+
+### Breaking Changes
+- **v0.2.0**: API changes for document-level graph support
+- **v0.3.0**: Modernized type system, requires Python 3.12+, integrated PredPatt functionality
+
+For detailed technical documentation, see the [Decomp Documentation](https://decomp.readthedocs.io/en/latest/).
+For issues and support, visit the [GitHub Repository](https://github.com/decompositional-semantics-initiative/decomp).

Dockerfile

@@ -1,9 +1,16 @@
-FROM python:3.6
+FROM quay.io/jupyter/datascience-notebook:2024-11-19
 
-WORKDIR /usr/src/decomp
 
-COPY . .
+# set working directory
+WORKDIR "${HOME}/decomp"
 
-RUN pip install --no-cache-dir -r requirements.txt && \
-    pip install --no-cache-dir . && \
-    python -c "from decomp import UDSCorpus; UDSCorpus()"
+# copy the package files
+COPY --chown=${NB_UID}:${NB_GID} . .
+
+# install the package and its dependencies
+RUN pip install --no-cache-dir -e ".[viz]" && \
+    # pre-build the UDS corpus to cache it in the image
+    python -c "from decomp import UDSCorpus; UDSCorpus()"
+
+# set the default command to start Jupyter Lab
+CMD ["start-notebook.py", "--IdentityProvider.token=''", "--IdentityProvider.password=''"]

LICENSE

@@ -1,6 +1,6 @@
 MIT License
 
-Copyright (c) 2020 Aaron Steven White
+Copyright (c) 2025 Aaron Steven White
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal