This repository was archived by the owner on Nov 27, 2018. It is now read-only.
This release contains the cytopast library as described in Ishikawa SA, Zhukova A, Iwasaki W, Gascuel O (2018) A Fast Likelihood Method to Reconstruct and Visualize Ancestral Scenarios.
The pipeline, its description and input data of the application to HIV-1C epidemic described in the article are available here, while the visualization produced with this pipeline is attached.