Build

Fix calorimetry #1830

Workflow file for this run

	# This is a simple workflow to run unit tests and code coverage
	name: Build

	# Controls when the workflow will run
	on:
	# Triggers the workflow on push and PRs
	push:
	pull_request:
	branches: [ main ]

	# Allows you to run this workflow manually from the Actions tab
	workflow_dispatch:

	# A workflow run is made up of one or more jobs that can run sequentially or in parallel
	jobs:

	check-codeclimate-credentials:
	name: Check CodeClimate credentials
	runs-on: ubuntu-22.04
	outputs:
	has_credentials: ${{ steps.setvar.outputs.has_credentials }}
	steps:
	- name: Check secrets
	id: setvar
	run: \|
	if [[ "${{ secrets.CODECLIMATE_TEST_REPORTER_ID }}" != "" ]]; \
	then
	echo "Credentials to access CodeClimate found"
	echo has_credentials="true" >> $GITHUB_OUTPUT
	else
	echo "Credentials to access CodeClimate not found"
	echo has_credentials="false" >> $GITHUB_OUTPUT
	fi

	build-icetray:
	name: Unit tests - IceTray (v1.13.0 - 3.10)
	needs: [ check-codeclimate-credentials ]
	runs-on: ubuntu-22.04
	strategy:
	matrix:
	torch_version: ['2.7.0']
	hardware: ["cpu"]
	container:
	# GitHub Actions overwrite the docker container entrypoint
	# inspect <image> --format '{{.Config.Entrypoint}}'
	image: icecube/icetray:icetray-devel-v1.13.0-ubuntu22.04-2025-02-12

	steps:
	- name: Mimmick Docker Entrypoint
	# The entrypoint of the container sets python paths
	# Because the entrypoint is skipped by GitHub, we set it here
	run: \|
	echo "I3_SRC=/opt/icetray/share/icetray" >> $GITHUB_ENV
	echo "I3_BUILD=/opt/icetray/share/icetray" >> $GITHUB_ENV
	echo "I3_TESTDATA=/root/icetray/build/test-data" >> $GITHUB_ENV
	echo "I3_PRODDATA=/root/icetray/build/prod-data" >> $GITHUB_ENV
	echo "ROOTSYS=/opt/icetray/cernroot" >> $GITHUB_ENV
	echo "LD_LIBRARY_PATH=/opt/icetray/lib:/opt/icetray/cernroot/lib:/opt/icetray/lib/tools:$LD_LIBRARY_PATH" >> $GITHUB_ENV
	echo "DYLD_LIBRARY_PATH=/opt/icetray/lib:/opt/icetray/cernroot/lib:/opt/icetray/lib/tools:$DYLD_LIBRARY_PATH" >> $GITHUB_ENV
	echo "PYTHONPATH=/opt/icetray/lib:/opt/icetray/cernroot/lib:$PYTHONPATH" >> $GITHUB_ENV
	echo "PATH=/opt/icetray/bin:$PATH" >> $GITHUB_ENV
	echo "HDF5_USE_FILE_LOCKING=FALSE" >> $GITHUB_ENV
	- name: Verify IceCube is importable
	run: python3 -c "import icecube; print('Import Successful')"
	- name: Show python version
	run: \|
	python3 --version
	pip --version
	pip3 list
	python3 -c "import icecube; print(icecube.__path__)"
	pip show setuptools

	- name: Install git
	run: \|
	apt-get --yes install sudo
	sudo apt update --fix-missing --yes
	sudo apt upgrade --yes
	sudo apt-get install --yes git

	- uses: actions/checkout@v4

	- name: Create virtual environment
	shell: bash
	run: \|
	python3 -m venv ~/venv --upgrade-deps
	source ~/venv/bin/activate
	pip --version
	python --version
	pip show setuptools

	- name: Print available disk space before graphnet install
	run: df -h

	- name: Upgrade packages in virtual environment
	shell: bash
	run: \|
	source ~/venv/bin/activate
	pip install --upgrade astropy
	pip install --upgrade PyYAML
	pip install --upgrade psutil
	pip install --upgrade setuptools
	pip install --upgrade versioneer
	pip show setuptools
	pip show versioneer
	- name: Install package
	uses: ./.github/actions/install
	with:
	editable: true
	use_vm: true
	torch_version: ${{ matrix.torch_version }}
	hardware: ${{ matrix.hardware }}
	- name: Print packages in pip
	shell: bash
	run: \|
	source ~/venv/bin/activate
	pip show torch
	pip show torch-geometric
	pip show torch-cluster
	pip show torch-sparse
	pip show torch-scatter
	pip show jammy_flows
	- name: Run unit tests and generate coverage report
	shell: bash
	run: \|
	source ~/venv/bin/activate
	coverage run --source=graphnet -m pytest tests/ --ignore=tests/examples/04_training --ignore=tests/utilities
	coverage run -a --source=graphnet -m pytest tests/examples/04_training
	coverage run -a --source=graphnet -m pytest tests/utilities
	coverage xml -o coverage.xml
	coverage report -m
	- name: Work around permission issue
	run: \|
	git config --global --add safe.directory /__w/graphnet/graphnet
	- name: Publish code coverage
	uses: paambaati/codeclimate-action@v9.0.0
	if: needs.check-codeclimate-credentials.outputs.has_credentials == 'true'
	env:
	CC_TEST_REPORTER_ID: ${{ secrets.CODECLIMATE_TEST_REPORTER_ID }}
	with:
	coverageLocations: coverage.xml:coverage.py


	build-matrix-examples:
	name: Examples - Ubuntu 22.04
	runs-on: ubuntu-22.04
	strategy:
	matrix:
	python-version: ['3.11']
	torch_version: ['2.7.0', '2.6.0', '2.5.0']
	hardware: ["cpu"]
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}
	- name: Print available disk space before graphnet install
	run: df -h
	- name: Show existing environment
	run: \|
	echo "PIP_FLAGS=${PIP_FLAGS}"
	python --version
	pip --version
	pip debug --verbose
	- name: Install package
	uses: ./.github/actions/install
	with:
	editable: true
	torch_version: ${{ matrix.torch_version }}
	hardware: ${{ matrix.hardware }}
	- name: Print available disk space after graphnet install
	run: df -h
	- name: Print packages in pip
	run: \|
	pip show torch
	pip show torch-geometric
	pip show torch-cluster
	pip show torch-sparse
	pip show torch-scatter
	pip show dill
	pip show numpy
	- name: Run unit tests and generate coverage report
	run: \|
	set -o pipefail # To propagate exit code from pytest
	pytest tests/examples --ignore=tests/examples/01_icetray/
	- name: Print available disk space after unit tests
	run: df -h

	build-macos-examples:
	# Runtime on macOS is multiplied with a factor 10 by github. Minimize!
	name: Examples - macOS 15
	runs-on: macos-15
	strategy:
	fail-fast: false
	matrix:
	python-version: ['3.11']
	torch_version: ['2.7.0']
	hardware: ["cpu"]

	steps:
	- uses: actions/checkout@v4

	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}

	- name: Show Python version
	run: \|
	python --version
	which python
	pip --version

	- name: Install dependencies
	uses: ./.github/actions/install
	with:
	torch_version: ${{ matrix.torch_version }}
	hardware: ${{ matrix.hardware }}
	- name: Print packages in pip
	run: \|
	pip show torch
	pip show torch-geometric
	pip show torch-cluster
	pip show torch-sparse
	pip show torch-scatter
	- name: Run unit tests and generate coverage report
	run: \|
	set -o pipefail # To propagate exit code from pytest
	pytest tests/examples --ignore=tests/examples/01_icetray/

	docs:
	name: Documentation Compilation
	runs-on: ubuntu-22.04
	steps:
	- uses: actions/checkout@v4
	- name: Set up Python 3.10
	uses: actions/setup-python@v3
	with:
	python-version: "3.10"
	- name: Install package
	uses: ./.github/actions/install
	- name: Build documentation
	run: \|
	cd docs
	make clean
	sphinx-apidoc \
	--module-first \
	--separate \
	--force \
	-d 2 \
	--templatedir=source/_templates/ \
	-o source/api ../src/
	sed -i "2s/.*/API/" source/api/graphnet.rst
	make html

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Fix calorimetry #1830

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Fix calorimetry #1830

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Workflow file for this run