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Update metaopt algorithm #1233
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Update metaopt algorithm #1233
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foxtran
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Mar 26, 2025
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awvwgk
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Apr 4, 2025
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@awvwgk, i'm going to drop this PR since running of omd took too much time for us. Does anyone have interest on it? |
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Oh... Meson builds are broken :| |
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Signed-off-by: Igor S. Gerasimov <foxtranigor@gmail.com>
Signed-off-by: Igor S. Gerasimov <foxtranigor@gmail.com>
Signed-off-by: Igor S. Gerasimov <foxtranigor@gmail.com>
Signed-off-by: Igor S. Gerasimov <foxtranigor@gmail.com>
Signed-off-by: Igor S. Gerasimov <foxtranigor@gmail.com>
Signed-off-by: Igor S. Gerasimov <foxtranigor@gmail.com>
Signed-off-by: Igor S. Gerasimov <foxtranigor@gmail.com>
Signed-off-by: Igor S. Gerasimov <foxtranigor@gmail.com>
Signed-off-by: Igor S. Gerasimov <foxtranigor@gmail.com>
Signed-off-by: Igor S. Gerasimov <foxtranigor@gmail.com>
Signed-off-by: Igor S. Gerasimov <foxtranigor@gmail.com>
Signed-off-by: Igor S. Gerasimov <foxtranigor@gmail.com>
Signed-off-by: Igor S. Gerasimov <foxtranigor@gmail.com>
Signed-off-by: Igor S. Gerasimov <foxtranigor@gmail.com>
Signed-off-by: Igor S. Gerasimov <foxtranigor@gmail.com>
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Originally, during randomisation, fixed atoms could be shifted. Now, they will keep their positions.
Now, normal distribution (with default sigma = 0.1A) is used for sampling structures. In addition, RMSD between structures are also printed.
Original sampling gives the following conformers:
With increasing shift to 1e-2, the values are following:
Switching to normal distribution (sigma = 1e-2):
And it looks a bit better.
For sigma = 1e-1, it started to work: