Generate temporary index for testing counting on index #55
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| name: Build and Test | |
| # Workflow is triggered only on push to the master branch or a pull request to | |
| # the master branch | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| install-and-test: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| submodules: recursive | |
| # Fix ownership of the checkout dir | |
| - name: Set ownership | |
| run: | | |
| chown -R $(id -u):$(id -g) $PWD | |
| # Do not use ubuntu image for python setup | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.9' | |
| - name: Install test dependencies | |
| run: | | |
| python -m pip install flake8 mypy build | |
| - name: Lint with flake8 | |
| run: | | |
| flake8 . --exclude 'docs/source/conf.py' --count --statistics | |
| - name: Type check with mypy | |
| run: | | |
| mypy newmap tests | |
| - name: Build AvxWindowFmIndex libraries | |
| run: | | |
| ./build_libraries.sh | |
| - name: Build wheel | |
| run: | | |
| python -m build --wheel | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: newmap-test-build | |
| path: dist/* | |
| - name: Install from wheel | |
| run: | | |
| python --version | |
| python -m pip install -v dist/*.whl | |
| python -m pip list | |
| python -m pip show -f newmap | |
| - name: Run tests | |
| run: | | |
| # Make sure to be running newmap from installed site-packages | |
| cd tests && python -m unittest discover | |
| build-wheel: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| submodules: recursive | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.9' | |
| - name: Install cibuildwheel | |
| run: | | |
| python -m pip install --upgrade cibuildwheel | |
| - name: Build AvxWindowFmIndex libraries | |
| run: | | |
| ./build_libraries.sh | |
| - name: Build wheel(s) | |
| run: | | |
| python -m cibuildwheel --output-dir wheelhouse | |
| - uses: actions/upload-artifact@v4 | |
| with: | |
| name: newmap-build | |
| path: wheelhouse/* |