Working GUI
Built out the Graphical User Interface and established each part of the pipeline as a button to be run individually. Also implemented a setup shell script to aid in ensuring there is an environments available with all necessary requirements to run both the main pipeline and medaka. NOTE: This currently does not use a Phased Haplotype FASTA file in MycoMap summarizing, it uses the default features developed by Stephen Douglas Russell. Utilization of the Phased Haplotype FASTA will come out in the next release.