python_test #63
Workflow file for this run
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| # Description: This is a test workflow for running a Python script on a self-hosted runner | |
| # Don't chain jobs together as any failure in one job will stop the workflow | |
| name: Python test | |
| run-name: python_test | |
| on: [pull_request] | |
| jobs: | |
| Preamble: | |
| runs-on: self-hosted | |
| steps: | |
| - run: pwd | |
| - run: which python | |
| - run: conda info --envs | |
| - name: Set up repo | |
| uses: actions/checkout@v4 | |
| - run: git status | |
| - run: echo "${{ github.ref }} | ${{ github.repository }} | ${{ github.event.pull_request.title }}" | |
| - name: Copy files to working-directory | |
| run: cp -r ./* /home/exouser/Desktop/blech_clust | |
| - name: Check files in working-directory | |
| run: ls -R /home/exouser/Desktop/blech_clust | |
| - name: Setup params | |
| run: cp /home/exouser/Desktop/blech_clust/params/_templates/* /home/exouser/Desktop/blech_clust/params | |
| - name: Check params | |
| run: for f in $(find /home/exouser/Desktop/blech_clust/params/ -type f); do echo $f; cat $f; done | |
| Spike-Only: | |
| runs-on: self-hosted | |
| needs: Preamble | |
| steps: | |
| - name: Prefect SPIKE only test | |
| shell: bash | |
| working-directory: /home/exouser/Desktop/blech_clust | |
| run: python pipeline_testing/prefect_pipeline.py -s 2>&1 | | |
| tee ~/Desktop/blech_clust/github.log; | |
| if grep -q "ERROR" ~/Desktop/blech_clust/github.log; | |
| then echo "ERROR detected by bash"; exit 1; fi | |
| EMG-Only: | |
| runs-on: self-hosted | |
| needs: Preamble | |
| steps: | |
| - name: Prefect EMG only test | |
| shell: bash | |
| working-directory: /home/exouser/Desktop/blech_clust | |
| run: python pipeline_testing/prefect_pipeline.py -e 2>&1 | | |
| tee ~/Desktop/blech_clust/github.log; | |
| if grep -q "ERROR" ~/Desktop/blech_clust/github.log; | |
| then echo "ERROR detected by bash"; exit 1; fi | |
| Spike-EMG: | |
| runs-on: self-hosted | |
| needs: Preamble | |
| steps: | |
| - name: Prefect SPIKE then EMG test | |
| shell: bash | |
| working-directory: /home/exouser/Desktop/blech_clust | |
| run: python pipeline_testing/prefect_pipeline.py --spike-emg 2>&1 | | |
| tee ~/Desktop/blech_clust/github.log; | |
| if grep -q "ERROR" ~/Desktop/blech_clust/github.log; | |
| then echo "ERROR detected by bash"; exit 1; fi | |