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feat: add user prompt for sampling rate if info.rhd file is missing #542

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Merged
merged 1 commit into from
Aug 1, 2025
Merged

feat: add user prompt for sampling rate if info.rhd file is missing #542

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9 changes: 7 additions & 2 deletions blech_clust.py
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Original file line number Diff line number Diff line change
Expand Up @@ -288,8 +288,13 @@ def generate_processing_scripts(dir_name, blech_clust_dir, electrode_layout_fram
print("\tOne file per SIGNAL Detected")

# Use info file for port list calculation
info_file = np.fromfile(dir_name + '/info.rhd', dtype=np.dtype('float32'))
sampling_rate = int(info_file[2])
info_file_path = os.path.join(dir_name, 'info.rhd')
if os.path.exists(info_file_path):
info_file = np.fromfile(info_file_path, dtype=np.dtype('float32'))
sampling_rate = int(info_file[2])
else:
print("info.rhd file not found. Please enter the sampling rate manually:")
sampling_rate = int(input("Sampling rate (Hz): "))

# Read the time.dat file for use in separating out
# the one file per signal type data
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10 changes: 7 additions & 3 deletions utils/blech_channel_profile.py
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Original file line number Diff line number Diff line change
Expand Up @@ -38,9 +38,13 @@ def plot_channels(dir_path, qa_out_path, file_type):
amp_files = glob.glob(os.path.join(dir_path, "amp*dat"))
digin_files = glob.glob(os.path.join(dir_path, "dig*dat"))
# Use info file for port list calculation
info_file = np.fromfile(os.path.join(
dir_path, 'info.rhd'), dtype=np.dtype('float32'))
sampling_rate = int(info_file[2])
info_file_path = os.path.join(dir_path, 'info.rhd')
if os.path.exists(info_file_path):
info_file = np.fromfile(info_file_path, dtype=np.dtype('float32'))
sampling_rate = int(info_file[2])
else:
print("info.rhd file not found. Please enter the sampling rate manually:")
sampling_rate = int(input("Sampling rate (Hz): "))
# Read the time.dat file for use in separating out the one file per signal type data
num_recorded_samples = len(np.fromfile(
os.path.join(dir_path, 'time.dat'), dtype=np.dtype('float32')))
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9 changes: 7 additions & 2 deletions utils/blech_reload_amp_digs.py
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Original file line number Diff line number Diff line change
Expand Up @@ -82,8 +82,13 @@
dig_in_list = sorted(dig_in_list)

# Use info file for port list calculation
info_file = np.fromfile(dir_name + '/info.rhd', dtype=np.dtype('float32'))
sampling_rate = int(info_file[2])
info_file_path = os.path.join(dir_name, 'info.rhd')
if os.path.exists(info_file_path):
info_file = np.fromfile(info_file_path, dtype=np.dtype('float32'))
sampling_rate = int(info_file[2])
else:
print("info.rhd file not found. Please enter the sampling rate manually:")
sampling_rate = int(input("Sampling rate (Hz): "))

# Read the time.dat file for use in separating out
# the one file per signal type data
Expand Down
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