feat: redirect output and error to output.log while displaying in terminal

[abuzarmahmood]

Co-authored-by: aider (gpt-4o) aider@aider.chat

[abuzarmahmood]

Generated edit command:

Summary of User's Issues and Requests

The user wants to modify the blech_run_process.sh script to redirect its output to a file named output.log. This involves capturing both standard output and standard error while still displaying them in the terminal.

Overview of Plan to Address the Issues

To address this issue, we will modify the blech_run_process.sh script to include the tee command. This will allow the output to be logged to output.log while still being displayed in the terminal.

Specific Details of Changes to be Made

1. Add Output Redirection Using tee
   • File: /home/exouser/Desktop/blech_github_bot/repos/katzlabbrandeis/blech_clust/blech_run_process.sh
   • Line: After line 0 (immediately after the shebang)
   • Description of Change: Add a line to redirect both standard output and standard error to output.log using the tee command.
   • Code Snippet of Edits:

     #!/bin/bash
     
     # Add this line to tee the output to output.log
     exec > >(tee -i output.log) 2>&1

Purpose

This change ensures that both standard output and standard error are redirected to output.log while still being displayed in the terminal, thus fulfilling the user's request.

Testing

After implementing the change, it is important to test the script to ensure that the output is correctly logged to output.log.

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This response was automatically generated by blech_bot using model gpt-4o

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Git repo: .git with 116 files
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blech_run_process.sh
To redirect the output of the blech_run_process.sh script to a file named output.log while still displaying it in the terminal, we will use the tee  
command. This will capture both standard output and standard error.                                                                                  

Here is the SEARCH/REPLACE block to implement this change:                                                                                           

blech_run_process.sh                                                                                                                                 

                                                                                                                                                     
<<<<<<< SEARCH                                                                                                                                       
#!/bin/bash                                                                                                                                          
=======                                                                                                                                              
#!/bin/bash                                                                                                                                          
                                                                                                                                                     
# Redirect both stdout and stderr to output.log and display in terminal                                                                              
exec > >(tee -i output.log) 2>&1                                                                                                                     
>>>>>>> REPLACE                                                                                                                                      
                                                                                                                                                     

After applying this change, you can run the script as usual, and it will log the output to output.log while also displaying it in the terminal.      

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Applied edit to blech_run_process.sh
Commit 22bd44c feat: redirect output and error to output.log while displaying in terminal