Convert test_rdflib_dumper.py from unittest to pytest #440
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| # Test linkml-runtime with upstream linkml and run linkml tests | |
| name: Test with upstream linkml | |
| env: | |
| UV_VERSION: "0.7.13" | |
| on: | |
| pull_request: | |
| workflow_dispatch: | |
| inputs: | |
| upstream_repo: | |
| description: "Upstream linkml repository to test against" | |
| required: true | |
| default: "linkml/linkml" | |
| upstream_branch: | |
| description: "Upstream linkml branch to test against" | |
| required: true | |
| default: "main" | |
| jobs: | |
| test_upstream: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ ubuntu-latest, windows-latest ] | |
| python-version: [ "3.9", "3.10", "3.11", "3.12", "3.13" ] | |
| exclude: | |
| - os: windows-latest | |
| python-version: "3.10" | |
| - os: windows-latest | |
| python-version: "3.11" | |
| - os: windows-latest | |
| python-version: "3.12" | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Get upstream branch and repo from first lines of PR Body | |
| if: github.event_name == 'pull_request' | |
| shell: bash | |
| env: | |
| PR_BODY: ${{ github.event.pull_request.body }} | |
| run: | | |
| set +e | |
| set +o pipefail | |
| UPSTREAM_BRANCH=$( \ | |
| echo "$PR_BODY" | \ | |
| head -2 | \ | |
| grep upstream_branch | \ | |
| cut -d ":" -f 2 | \ | |
| awk '{$1=$1};1' \ | |
| ) | |
| echo "Got upstream branch:" | |
| echo $UPSTREAM_BRANCH | |
| if [[ -z "$UPSTREAM_BRANCH" ]]; then | |
| echo "Using main as default" | |
| UPSTREAM_BRANCH="main" | |
| fi | |
| UPSTREAM_REPO=$( \ | |
| echo "$PR_BODY" | \ | |
| head -2 | \ | |
| grep upstream_repo | \ | |
| cut -d ":" -f 2 | \ | |
| awk '{$1=$1};1' \ | |
| ) | |
| echo "Got upstream repo:" | |
| echo $UPSTREAM_REPO | |
| if [[ -z "$UPSTREAM_REPO" ]]; then | |
| echo "Using linkml/linkml as default" | |
| UPSTREAM_REPO="linkml/linkml" | |
| fi | |
| echo "upstream_branch=$UPSTREAM_BRANCH" >> "$GITHUB_ENV" | |
| echo "upstream_repo=$UPSTREAM_REPO" >> "$GITHUB_ENV" | |
| - name: Get upstream branch from workflow dispatch | |
| if: github.event_name == 'workflow_dispatch' | |
| shell: bash | |
| run: | | |
| echo "upstream_branch=${{ inputs.upstream_branch }}" >> "$GITHUB_ENV" | |
| echo "upstream_repo=${{ inputs.upstream_repo }}" >> "$GITHUB_ENV" | |
| - name: checkout upstream | |
| uses: actions/checkout@v4.2.2 | |
| with: | |
| repository: "${{ env.upstream_repo }}" | |
| path: linkml | |
| ref: "${{ env.upstream_branch }}" | |
| fetch-depth: 0 | |
| - name: checkout linkml-runtime | |
| uses: actions/checkout@v4.2.2 | |
| with: | |
| path: linkml-runtime | |
| fetch-depth: 0 | |
| - name: Ensure tags for linkml upstream if a different one than linkml/linkml is specified | |
| if: "${{ env.upstream_repo != 'linkml/linkml' }}" | |
| working-directory: linkml | |
| run: | | |
| git remote add upstream https://github.com/linkml/linkml | |
| git fetch upstream --tags | |
| - name: Ensure tags for linkml-runtime if not run from main repo | |
| if: github.repository != 'linkml/linkml-runtime' | |
| working-directory: linkml-runtime | |
| run: | | |
| git remote add upstream https://github.com/linkml/linkml-runtime | |
| git fetch upstream --tags | |
| - name: Install uv | |
| uses: astral-sh/setup-uv@v6 | |
| with: | |
| enable-cache: true | |
| version: ${{ env.UV_VERSION }} | |
| python-version: ${{ matrix.python-version }} | |
| # we are not using linkml-runtime's lockfile, but simulating what will happen | |
| # when we merge this and update linkml's lockfile | |
| - name: add linkml-runtime to lockfile | |
| working-directory: linkml | |
| run: uv add ../linkml-runtime | |
| # note that we run the installation step always, even if we restore a venv, | |
| # the cache will restore the old version of linkml-runtime, but the lockfile | |
| # will only store the directory dependency (and thus will reinstall it) | |
| # the cache will still speedup the rest of the installation | |
| - name: install linkml | |
| working-directory: linkml | |
| run: uv sync --all-groups | |
| - name: print linkml-runtime version | |
| working-directory: linkml | |
| run: uv run python -c 'import linkml_runtime; from importlib.metadata import version; print(linkml_runtime.__file__); print(version("linkml_runtime"))' | |
| - name: run linkml tests | |
| # Set bash shell to fail correctly on Windows https://github.com/actions/runner-images/issues/6668 | |
| shell: bash | |
| working-directory: linkml | |
| run: uv run -m pytest --with-slow |