Only count sampled_portion for direct inputs #3350

	name: Server

	on: [push]

	jobs:

	client:
	defaults:
	run:
	working-directory: web
	env:
	NODE_OPTIONS: --openssl-legacy-provider
	name: Client Tests
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	with:
	submodules: 'recursive'
	- uses: actions/setup-node@v4
	with:
	node-version: 'lts/*'
	- run: yarn install --frozen-lockfile --network-timeout 300000
	- run: yarn lint
	- run: yarn build

	server:
	runs-on: ubuntu-latest

	services:
	postgres:
	# This version is duplicated in the root docker-compose.yml
	image: postgres:13
	env:
	POSTGRES_USER: nmdc
	POSTGRES_PASSWORD: nmdc
	POSTGRES_DB: nmdc
	ports:
	- 5432:5432

	strategy:
	max-parallel: 4
	matrix:
	python-version: [3.12]

	steps:
	- uses: actions/checkout@v4
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v5
	with:
	python-version: ${{ matrix.python-version }}
	- name: Create environment
	run: \|
	echo 'export NMDC_DATABASE_URI="postgresql://nmdc:nmdc@localhost:5432/nmdc"' >> .env
	echo 'export NMDC_TESTING_DATABASE_URI="postgresql://nmdc:nmdc@localhost:5432/nmdc"' >> .env
	echo 'export NMDC_MONGO_USER="${{ secrets.NMDC_MONGO_USER }}"' >> .env
	echo 'export NMDC_MONGO_PASSWORD="${{ secrets.NMDC_MONGO_PASSWORD }}"' >> .env
	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install tox tox-gh-actions
	- name: Test with tox
	run: tox

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