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Removing redundant samtools/sort into samtools/index

Status: Open.

#80 In nf-core/scnanoseq;

· ljwharbers opened on Aug 18, 2025

resume skips samples/chromosomes at isoquant step

bugSomething isn't workingSomething isn't working

Status: Open.

#76 In nf-core/scnanoseq;

· ljwharbers opened on Aug 12, 2025

Evaluate BLAZE's barcode correction

enhancementNew feature or requestNew feature or request

Status: Open.

#75 In nf-core/scnanoseq;

· lianov opened on Jul 21, 2025

Number of final mapped reads and soft-clipping

bugSomething isn't workingSomething isn't working

Status: Open.

#72 In nf-core/scnanoseq;

· lauratwomey opened on Jun 20, 2025

Optimize GROUP_TRANSCRIPTS process

enhancementNew feature or requestNew feature or request

Status: Open.

#71 In nf-core/scnanoseq;

· atrull314 opened on Jun 17, 2025

Exposing parameters to control barcode and UMI length for datasets generated with technologies other than 10X Genomics

enhancementNew feature or requestNew feature or request

Status: Open.

#66 In nf-core/scnanoseq;

· wendelljpereira opened on May 14, 2025

nanofilt => chopper (or similar)

enhancementNew feature or requestNew feature or request

Status: Open.

#61 In nf-core/scnanoseq;

· nick-youngblut opened on May 6, 2025

Output combined gtf

enhancementNew feature or requestNew feature or request

Status: Open.

#55 In nf-core/scnanoseq;

· CHENAO-QIAN opened on Apr 17, 2025

Isoquant SyntaxWarning: invalid escape sequence '\d'

bugSomething isn't workingSomething isn't working

Status: Open.

#51 In nf-core/scnanoseq;

· lauratwomey opened on Apr 9, 2025

JSON schema: Scnanoseq

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#46 In nf-core/scnanoseq;

· jen-reeve opened on Mar 25, 2025