Skip to content

Enable parsing of multi-line config values #9450

Enable parsing of multi-line config values

Enable parsing of multi-line config values #9450

Triggered via pull request June 25, 2025 12:43
Status Success
Total duration 13m 13s
Artifacts 64

pytest.yml

on: pull_request
Matrix: setup
Get test file matrix
5s
Get test file matrix
Matrix: test
Fit to window
Zoom out
Zoom in

Annotations

64 warnings
Run test_cli.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_actions_awstest.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_subworkflows.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_if_empty_null.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_version_consistency.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_actions_nf_test.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_rocrate_readme_sync.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_template_strings.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_merge_markers.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_actions_awsfulltest.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_list.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run components/test_components_utils.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_modules_json.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_configs.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_local_component_structure.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_plugin_includes.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_datasets/test_test_datasets_search.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_lint_utils.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_components.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_datasets/test_test_datasets_utils.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_modules.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_create_logo.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_actions_schema_validation.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_test_utils.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_multiqc_config.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_rocrate.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_pipelines.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_create.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_nfcore_yml.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_nextflow_config.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_files_exist.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_modules_utils.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_params_file.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_lint.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_files_unchanged.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_bump_version.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_refgenie.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run components/test_components_snapshot_test.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/lint/test_nf_test_content.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_download.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run test_utils.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_create_app.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_info.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_create.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_bump_versions.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_sync.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_info.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_create.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_list.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_schema.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_remove.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_remove.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run pipelines/test_launch.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_patch.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_install.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_patch.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_list.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_modules_json.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_install.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run components/test_components_generate_snapshot.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_update.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_lint.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run subworkflows/test_update.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.
Run modules/test_lint.py with Python 3.9 on ubuntu-latest
No files were found with the provided path: ./snapshot_report.html. No artifacts will be uploaded.

Artifacts

Produced during runtime
Name Size Digest
coverage_components__test_components_generate_snapshot.py
5.83 KB
sha256:aa58e43c12536979555788ab6bbae6e6ff256710ca9624712875b774e1db59a0
coverage_components__test_components_snapshot_test.py
5.82 KB
sha256:7cf2dd803926034028a4eab2de0acc2f76aedf2739cb9a6f7f287803399e98c2
coverage_components__test_components_utils.py
5.63 KB
sha256:5721242e640ff79cba66f38ddb541089a69026381edd7c771178beab58c22c0e
coverage_modules__test_bump_versions.py
6.2 KB
sha256:fe08493e0aa3935b1fe953ae78b35b152aea3edc5f0ad3180440b2f0d3070a84
coverage_modules__test_create.py
6.19 KB
sha256:9aa76344f02b4d784c5c85686f4b65e3ac3d5a3c5e99c0558e1356a4e6bfdf01
coverage_modules__test_info.py
6.3 KB
sha256:715d63e4cebf17f8b2d02972860e05025ed7e77250d2a0008c8c3b499d06e471
coverage_modules__test_install.py
6.26 KB
sha256:58ee3119a9d29d0f992388ef331ba8250e68f341a9e63f6b715d09c5b90339ea
coverage_modules__test_lint.py
7.6 KB
sha256:e4b5a183e94791054fd86bdb74754799c615a4c684ee0bcabcdec7a519ad3f75
coverage_modules__test_list.py
6.31 KB
sha256:78a741f6edab102298e3ef1d90b2eb817095a10f471ed76e827e5a86d75611a4
coverage_modules__test_modules_json.py
6.37 KB
sha256:6bc64957f080a7fadd86303d72437fe7fbc72f1507918414ab0df03cd34f7e91
coverage_modules__test_modules_utils.py
6.15 KB
sha256:46c96252411919d961bc566ced796aee3206e2771a81f1d5bdf6603e3a4e9f03
coverage_modules__test_patch.py
6.47 KB
sha256:b0159910cbf2f97180d93266ff7d95861f7a4dea69b5fce277862a525f45583f
coverage_modules__test_remove.py
6.23 KB
sha256:aa4eb539ecb67888f13805d742ff835e63c11447dd5c2cfac4a7c1710aa514a6
coverage_modules__test_update.py
6.5 KB
sha256:9cdffd28b88d946c1780150e51f90e576a1d6b71ae38766ff0ec1c2941c9f0e8
coverage_pipelines__lint__test_actions_awsfulltest.py
6.99 KB
sha256:45b3f697f12a887426b941feeac30221b925b81a2f93338ed7d47e89cb42f482
coverage_pipelines__lint__test_actions_awstest.py
6.99 KB
sha256:4b83a2c90d3c11236ef5b427ce0d1b468bd3b7588f0df784ede4b1c6f5748062
coverage_pipelines__lint__test_actions_nf_test.py
6.99 KB
sha256:b3331b50dea9f2a6e30c581944ac2e8e225e4886136faa4e0dd5c1fa573d672d
coverage_pipelines__lint__test_actions_schema_validation.py
6.99 KB
sha256:f1a2dd0567443d00c3a0eea615293ac8df4918b9b13fe3d8b15877706f5fb2b0
coverage_pipelines__lint__test_configs.py
6.99 KB
sha256:4c5158d42dfad8f3fc6afcad3dd418e0061b49377b4591c548088648e652bcd3
coverage_pipelines__lint__test_files_exist.py
7 KB
sha256:c8082e29fe3c0d6a51d2a2aa0848ff2e96c04f9f8c32c9aaf427346081d68caa
coverage_pipelines__lint__test_files_unchanged.py
7 KB
sha256:c68aada9e4b4def29c40cfa92e8a15f1f062fb4e7092eb9889cd6ac114ea974f
coverage_pipelines__lint__test_if_empty_null.py
6.98 KB
sha256:087bee5f8a2e37c3e757ceba51a5d340253dd5e7189bcec699f1089e54d95597
coverage_pipelines__lint__test_local_component_structure.py
6.98 KB
sha256:b8ee49252eb06efd93ad65682c6b1365af171cf1262e72229eeb4d02f09f495c
coverage_pipelines__lint__test_merge_markers.py
6.99 KB
sha256:dd4d3a2b7441162b994a6bd018b1352f6ea6825a4315560503cf593e674a877d
coverage_pipelines__lint__test_modules_json.py
6.98 KB
sha256:a3b328785e162cab99ef695d1dff1210b5ee09388c23c82c80a7d343e338e5a7
coverage_pipelines__lint__test_multiqc_config.py
7.06 KB
sha256:b4b6fbf3ec2a7b4f79fab747325ff5642203ecadba85c1ecbd708ff5b933e6a9
coverage_pipelines__lint__test_nextflow_config.py
7.04 KB
sha256:57b5933ca127182e272826f7c23451cc1815bc780c5a86d94ec2c1fca20e7124
coverage_pipelines__lint__test_nf_test_content.py
7 KB
sha256:7f2db06a0e5fb5037756bf5cadd56cefcf9d053457aba20271e3a19715784d67
coverage_pipelines__lint__test_nfcore_yml.py
6.98 KB
sha256:81e1b30537be5a463338b04e124d640592494ce9e9e25d9e130b3548a969f338
coverage_pipelines__lint__test_plugin_includes.py
6.98 KB
sha256:b58fca28dc0dd2c66553b633e65d26b332b45e597169979f474a86bd49cf026c
coverage_pipelines__lint__test_rocrate_readme_sync.py
6.98 KB
sha256:4eacfde3b082b3ebad36b5d4309842dd596f24092b50363c884469dadf0dbff5
coverage_pipelines__lint__test_template_strings.py
7.33 KB
sha256:af030cc11ecef94a1d00bb4fab27ff25f81d07c2e84f1b67b4428e3709c2b560
coverage_pipelines__lint__test_version_consistency.py
7.04 KB
sha256:4246b51bc4b622b5980e2794ed76813817e4ebd563c0ff9589acef764d4ebb4f
coverage_pipelines__test_bump_version.py
5.68 KB
sha256:fdea61b3af2eed5626e50858a182f361372a9f4b01d481857b9e56f1e7740e37
coverage_pipelines__test_create.py
5.62 KB
sha256:ac4dc9d12a8bde224cf75ec71f2a5cf8c0c1c8faafb800d312da0ef1f2be463f
coverage_pipelines__test_create_app.py
5.65 KB
sha256:901416b7ad02540d86121b5e617653b9378be36bcb8ef08027a914ce37b020e0
coverage_pipelines__test_create_logo.py
5.62 KB
sha256:104f493c002571527d621a92aef9feb3f219782b5855a6b9f6a7e6891b3a48e1
coverage_pipelines__test_download.py
6.01 KB
sha256:54fc86fbab34c7835e944f192b1a7d41e3449b54c954c1fa35fca0308f5d084d
coverage_pipelines__test_launch.py
5.78 KB
sha256:a4ff62840f3159012b004eb826c12d4d801623504cc7718a6764c54931299283
coverage_pipelines__test_lint.py
7.54 KB
sha256:a1f27c821dde11737df29e4b35f3ac32835ba4e877136b9e077fa477735efbcc
coverage_pipelines__test_list.py
5.47 KB
sha256:83269e4caaab14099035b68e77af281b2271e215b1252530cc804e6050049103
coverage_pipelines__test_params_file.py
5.72 KB
sha256:dbed9d5468f3ac09eb1284faf93e10a5b90f724b451fbb994205ed9fc50865ae
coverage_pipelines__test_refgenie.py
5.5 KB
sha256:c724d728049640987e3f59d964f1fc364ff416acb7c1b05c19ad1416fa12f9ef
coverage_pipelines__test_rocrate.py
5.68 KB
sha256:b6840646ba3127f98527ceb024021a04ccae023f1a3e2f7c01baf193ec3bc4ce
coverage_pipelines__test_schema.py
5.71 KB
sha256:70639b0cc9ff8d22315387c2816eaed804ada2e8e669cf32fcdf2a1bc10a4f98
coverage_pipelines__test_sync.py
5.72 KB
sha256:7c88d6d38d06d2a136fb94a2673deb501a757325fb1538000f751bb90fcfeaa1
coverage_subworkflows__test_create.py
7.07 KB
sha256:d62a885965ef51ce43bb9081a5623da7e3d3042374b54da400e257e9f837d70e
coverage_subworkflows__test_info.py
7.18 KB
sha256:c2991478271d5e09ba5a1eb2020d576928c42680d9f1bdcacf717c2cb07aebc8
coverage_subworkflows__test_install.py
7.2 KB
sha256:ce52a7d52c1019319c845896e0119d8593f7490afd207a9fb3fc91b29a46fa19
coverage_subworkflows__test_lint.py
7.4 KB
sha256:139b3bc42bfb918a362c86b93e182ed18c2d62e654ee4c45dd92f538ecf51ad6
coverage_subworkflows__test_list.py
7.17 KB
sha256:f28c521084ac16c7ffbf237c782ba74aa551dbe269c04a346d417376f05ee1ba
coverage_subworkflows__test_patch.py
7.32 KB
sha256:4906ceff5ee2148705b0d42515da89e9389a2b56fb8a88de7040a01035d0a65c
coverage_subworkflows__test_remove.py
7.21 KB
sha256:4901d9ada6e0cebd4cb931c94758767b29c717eca74ca22604d6592752b554df
coverage_subworkflows__test_update.py
7.34 KB
sha256:295c12962c06a418cf49a108fef207eaa1233fad69d6fd2e3d0e3e6ebb141e5e
coverage_test_cli.py
7.51 KB
sha256:adbef5768bf53571c641135212f14d40df74542b5d4bb087163d86dd3d8955ff
coverage_test_components.py
5.45 KB
sha256:1c53810cfc85847b8a68ecd709757b96360dbd3a50a31a50d7882f954f917ade
coverage_test_datasets__test_test_datasets_search.py
5 KB
sha256:52af3a5e1f79f08771e6fb09d5ace856e7057937e882e5f435c587cd4e87b3eb
coverage_test_datasets__test_test_datasets_utils.py
5 KB
sha256:e9a5a4268475f943076431b3875e6565377f9cae943a3309680705ab829c0f08
coverage_test_lint_utils.py
5.44 KB
sha256:f8e1d4c0c4c58fb124969b0a0828c46f855d271f6ab3d9977f2b57f22b2e8664
coverage_test_modules.py
6.13 KB
sha256:9fc3dfd700a109b20a19ae0b11258e8165a11d01ca8e09203381bb26e2100d3a
coverage_test_pipelines.py
5.45 KB
sha256:814f471d8cecf8580797aa0a436ad9293f47bd2ee37c6db68993f4bd7b451a9d
coverage_test_subworkflows.py
6.83 KB
sha256:a4e66b9c953e2fe02d2abf121dbbfc21270896554752cc03c9dd13a9f1ab5ba8
coverage_test_test_utils.py
5.45 KB
sha256:f26c798167a8ed0891e0141e4cdf7124fa1480e2e9c8ff0bd8b584a9849f3c03
coverage_test_utils.py
5.66 KB
sha256:1e79ea02e732593a05e63f6e28f56334e1c75284162ccd68c3adcf88e44c39b4