Repositories list

• ANNEXA

  Public
  Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).

  R

  •

  MIT License

  •3•15•0•0•Updated Aug 27, 2025Aug 27, 2025

• scans

  Public
  R

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Aug 5, 2025Aug 5, 2025

• .github

  Public
  IGDR Long Read (LR) github organization

  0•0•0•0•Updated Apr 5, 2025Apr 5, 2025

• Resist_Portal

  Public
  R

  •

  MIT License

  •0•1•0•0•Updated Jan 7, 2025Jan 7, 2025

• EnrichRadar

  Public
  DESeq2 output viewer + make interactive filters

  R

  •0•2•0•0•Updated Jul 10, 2024Jul 10, 2024

• TransforKmers

  Public
  Jupyter Notebook

  •0•2•0•0•Updated Apr 29, 2024Apr 29, 2024

• ANNEXseq

  Public
  Nextflow pipeline to combine nanoseq and ANNEXA for long-read RNASeq data

  annotation-toollncrnananopore-sequencing+ 1long-read-sequencing

  Nextflow

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  MIT License

  •0•2•2•0•Updated Nov 15, 2023Nov 15, 2023

• BamType

  Public
  Quality control of newly discovered transcript annotation

  HTML

  •

  MIT License

  •0•2•0•0•Updated Jun 30, 2023Jun 30, 2023