Repositories list

• plmfit

  Public
  PLMFit platform for TL on PLMs

  aipytorchtransfer-learning+ 7plmfine-tuningprotein-engineeringpytorch-lightningdownstream-tasksdeepspeedprotein-language-models

  Python

  •

  MIT License

  •2•16•6•3•Updated Aug 13, 2025Aug 13, 2025

• Serum_DML_2025

  Public
  Python

  •0•0•0•0•Updated May 13, 2025May 13, 2025

• synthetic-coevolution

  Public
  Synthetic coevolution reveals adaptive mutational trajectories of neutralizing antibodies and SARS-CoV-2

  Python

  •

  MIT License

  •1•1•0•0•Updated Apr 16, 2025Apr 16, 2025

• Omicron_DML

  Public
  Code repo associated with the Frei_Gao_2023 manuscript

  Python

  •

  MIT License

  •1•3•1•0•Updated Jan 30, 2025Jan 30, 2025

• TouCAN

  Public
  PureBasic

  •

  MIT License

  •1•3•1•0•Updated Dec 11, 2024Dec 11, 2024

• sc_AbSpecificity_pred

  Public
  Repository for ICLR Workshop publication. Code for Antigen specificity predictions of OVA and RBD single cell sequencing datasets.

  Jupyter Notebook

  •0•1•0•0•Updated Aug 28, 2024Aug 28, 2024

• meta-learning-for-protein-engineering

  Public
  Meta learning addresses noisy and under-labeled data in machine learning-guided antibody engineering (https://doi.org/10.1016/j.cels.2023.12.003)

  Python

  •

  MIT License

  •3•20•0•0•Updated Aug 8, 2024Aug 8, 2024

• Kapetanovic_2024

  Public
  0•0•0•0•Updated Mar 16, 2023Mar 16, 2023

• SpeedingCARs_2022

  Public
  R

  •2•2•0•0•Updated Sep 27, 2022Sep 27, 2022

• TIL_scRNA_profiling_lung_cancer_Bieberich

  Public
  Single cell analysis of TILs from lung cancer

  R

  •

  MIT License

  •0•0•0•0•Updated Sep 13, 2022Sep 13, 2022

• Taft_Weber_2021

  Public
  Python

  •3•4•2•0•Updated Sep 7, 2022Sep 7, 2022

• Vazquez-Lombardi_2022

  Public
  R

  •1•0•1•0•Updated Aug 18, 2022Aug 18, 2022

• Ehling_Covid_2021

  Public
  R

  •0•1•0•0•Updated Dec 14, 2021Dec 14, 2021

• scSeq_convalescentCovid

  Public
  Custom code for data analysis from "A single-cell atlas of lymphocyte adaptive immune repertoires and transcriptomes reveals age-related differences in convalescent COVID-19 patients"

  0•1•0•0•Updated Nov 19, 2021Nov 19, 2021