Repositories list

• dandi-archive

  Public
  EMBER - DANDI API server and Web app

  Python

  •14•2•3•0•Updated Aug 18, 2025Aug 18, 2025

• dandi-infrastructure

  Public
  A repository to collect docs/issues on DANDI project infrastructure for Ember

  HCL

  •

  Apache License 2.0

  •8•0•4•0•Updated Aug 13, 2025Aug 13, 2025

• bossypaints

  Public
  Web-based dense annotation tool for connectomics

  Jupyter Notebook

  •

  Apache License 2.0

  •0•1•4•0•Updated Aug 4, 2025Aug 4, 2025

• BBQS-EMBER-web

  Public
  BBQS EMBER Archive web app

  Vue

  •1•1•8•1•Updated Jul 30, 2025Jul 30, 2025

• neuvue-client

  Public
  python client for neuvue-queue

  Python

  •

  Apache License 2.0

  •1•3•0•0•Updated Jul 28, 2025Jul 28, 2025

• neuvue-app

  Public
  MICrONS Proofreading App

  JavaScript

  •

  Apache License 2.0

  •2•1•15•1•Updated Jul 17, 2025Jul 17, 2025

• grand-cypher

  Public
  Implementation of the Cypher language for searching NetworkX graphs

  networkxnetworkscypher+ 5grandpythonneo4jgraphgraph-database

  Python

  •

  Apache License 2.0

  •14•117•12•1•Updated Jul 3, 2025Jul 3, 2025

• motifstudio_client

  Public
  Python

  •

  Apache License 2.0

  •0•0•0•0•Updated Jun 27, 2025Jun 27, 2025

• motifstudio

  Public
  motifssubgraph-isomorphismbossdb+ 2grand-graphsgrandiso

  TypeScript

  •

  Apache License 2.0

  •0•1•3•0•Updated Jun 26, 2025Jun 26, 2025

• dotmotif

  Public
  A performant, powerful query framework to search for network motifs

  neo4jnetworkxgraph-database+ 13connectomicsquery-languageconnectomemotif-discoverygraph-matchingmotifssubgraph-isomorphism+ 6

  Python

  •

  Apache License 2.0

  •10•88•4•0•Updated Jun 19, 2025Jun 19, 2025

• neuprint-cm

  Public
  Dockerfile

  •1•0•0•0•Updated Jun 17, 2025Jun 17, 2025

• neuPrintHTTP

  Public
  Implements connectomics REST interface

  Go

  •2•0•0•0•Updated Jun 17, 2025Jun 17, 2025

• bossdb-rag-chatbot

  Public
  A Language Interface to the BossDB Ecosystem

  Python

  •

  Apache License 2.0

  •0•1•5•3•Updated Jun 17, 2025Jun 17, 2025

• bossVR

  Public
  Syglass + BossDB

  Python

  •

  Apache License 2.0

  •2•1•0•0•Updated Jun 2, 2025Jun 2, 2025

• substrate

  Public archive
  A high-speed three.js substrate for visualizing biofidelic data

  visualizationthreejsdata-science+ 8jupytergraphicsjupyter-notebookdata-visualization3djhuaplpytri+ 1

  JavaScript

  •

  Apache License 2.0

  •1•5•7•0•Updated May 28, 2025May 28, 2025

• grand

  Public
  Your favorite Python graph libraries, scalable and interoperable. Graph databases in memory, and familiar graph APIs for cloud databases.

  sqlserverlessgraph+ 15graph-algorithmsgraphsneptunedynamodbnetworkxgraph-theorygraph-database+ 8

  Python

  •

  Apache License 2.0

  •8•111•6•0•Updated May 25, 2025May 25, 2025

• ffn

  Public
  Flood-Filling Networks for instance segmentation in 3d volumes.

  Python

  •

  Apache License 2.0

  •101•0•0•0•Updated Apr 16, 2025Apr 16, 2025

• BBQS-EMBER-Data-Model

  Public
  Core repository for the EMBER ARCHIVE

  Mermaid

  •0•0•9•2•Updated Apr 8, 2025Apr 8, 2025

• neuvue-manage

  Public
  Resources and documentation to create and manage proofreading tasks on NeuVue

  Jupyter Notebook

  •

  Apache License 2.0

  •1•2•0•0•Updated Apr 7, 2025Apr 7, 2025

• vsvi2precomputed

  Public
  Script to convert VSVI (used in VAST) image datasets to precomputed volumes

  Python

  •

  Apache License 2.0

  •0•1•3•0•Updated Mar 31, 2025Mar 31, 2025

• open-data-registry

  Public
  A registry of publicly available datasets on AWS

  Python

  •

  Apache License 2.0

  •1k•0•0•0•Updated Mar 28, 2025Mar 28, 2025

• campfire

  Public
  Complementary Automated Methods for Proofreading

  Python

  •0•0•0•0•Updated Mar 27, 2025Mar 27, 2025

• dandi-docs

  Public
  EMBER-DANDI Documentation

  16•0•3•1•Updated Feb 18, 2025Feb 18, 2025

• neuroglancer

  Public
  WebGL-based viewer for volumetric data

  TypeScript

  •

  Apache License 2.0

  •326•1•0•1•Updated Feb 12, 2025Feb 12, 2025

• grandiso-rust

  Public
  Rust

  •

  Apache License 2.0

  •0•0•1•0•Updated Jan 29, 2025Jan 29, 2025

• bossdb-collab-notebooks

  Public
  Collection of public notebooks for all projects on BossDB

  Jupyter Notebook

  •

  Apache License 2.0

  •0•1•2•0•Updated Jan 24, 2025Jan 24, 2025

• npyjs

  Public
  Read numpy .npy files in JavaScript

  nodejsnumpy3d+ 4jhuapljavascriptnpynpy-files

  JavaScript

  •

  Apache License 2.0

  •22•89•8•2•Updated Jan 13, 2025Jan 13, 2025

• neuromorpholib

  Public
  Python

  •

  Apache License 2.0

  •1•4•1•0•Updated Jan 10, 2025Jan 10, 2025

• neuvue-queue

  Public
  TypeScript

  •

  Apache License 2.0

  •0•1•5•0•Updated Dec 13, 2024Dec 13, 2024

• bossdb-kasthuri-challenge

  Public
  Segmentation challenge for the Kasthuri et. al 2015 dataset

  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Dec 10, 2024Dec 10, 2024