Shimodaira Laboratory

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10 repositories

modelmap
Public
Embedding language models in probability space via log-likelihood vectors
visualization embeddings language-model tsne information-geometry llm acl2025
TeX
•1•11•0•1•Updated Aug 18, 2025Aug 18, 2025
Drug-Gene-Analogy
Public
Predicting drug–gene relations via analogy tasks with word embeddings (Scientific Reports 15, 17240 (2025))
nlp bioinformatics word-embeddings analogy-task drug-target-interactions
Python
•0•1•0•0•Updated Jul 2, 2025Jul 2, 2025
Universal-Geometry-with-ICA
Public
Discovering Universal Geometry in Embeddings with ICA (Published in EMNLP 2023)
embeddings pca emnlp principal-component-analysis whitening cross-lingual interpretability ica independent-component-analysis emnlp2023
Python
•0•20•0•0•Updated Jun 17, 2025Jun 17, 2025
consel
Public
CONSEL: for assessing the confidence of phylogenetic tree selection
bootstrap software
C
•4•6•2•1•Updated Dec 27, 2023Dec 27, 2023
pvclust
Public
An R package for hierarchical clustering with p-values
bootstrap software
R
•7•47•0•0•Updated Dec 5, 2019Dec 5, 2019
scaleboot
Public
bootstrap software
HTML
•0•0•1•0•Updated Dec 4, 2019Dec 4, 2019
eigenvectors-from-eigenvalues
Public
Checking "Eigenvectors from Eigenvalues" (arXiv:1908.03795) by Peter B. Denton, Stephen J. Parke, Terence Tao, Xining Zhang
HTML
•0•2•0•0•Updated Nov 15, 2019Nov 15, 2019
splr
Public
Python package to handle matrices written as the sum of a low rank and a sparse matrix (under development)
python3 sparse-matrix singular-value-decomposition centering
Python
•0•2•0•0•Updated Oct 11, 2018Oct 11, 2018
sembei
Public
🍘 単語分割を経由しない単語埋め込み 🍘
nlp japanese word-embeddings software computational-linguistics
Jupyter Notebook
•4•14•0•0•Updated Mar 19, 2017Mar 19, 2017
kadingir
Public
Implementations of spectral word embedding methods
word-embeddings software computational-linguistics
C++
•2•1•0•0•Updated Aug 15, 2016Aug 15, 2016