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    44 repositories

    • MedAgentBench

      Public
      MedAgentBench: A Realistic Virtual EHR Environment to Benchmark Medical LLM Agents
      agentbenchmarkmedical
      Python
      •
      MIT License
      •20•104•1•0•Updated Aug 21, 2025Aug 21, 2025

    • CheXbert

      Public
      Combining Automatic Labelers and Expert Annotations for Accurate Radiology Report Labeling Using BERT
      natural-language-processingdeep-learningmedical-imagingradiologybert
      Python
      •
      Other
      •31•136•2•0•Updated Aug 1, 2025Aug 1, 2025

    • ngboost

      Public
      Natural Gradient Boosting for Probabilistic Prediction
      machine-learninguncertainty-estimationgradient-boostingnatural-gradientspythonngboost
      Python
      •
      Apache License 2.0
      •242•1.8k•48•9•Updated Jul 14, 2025Jul 14, 2025

    • optimizing-vital-signs

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Apr 3, 2025Apr 3, 2025

    • stanfordmlgroup.github.io

      Public
      Group Website
      HTML
      •42•97•4•12•Updated Mar 6, 2025Mar 6, 2025

    • MedAgentBench-dev

      Public
      A Comprehensive Benchmark to Evaluate LLMs as Agents in Medical Applications
      Python
      •
      Apache License 2.0
      •190•2•0•0•Updated Jan 28, 2025Jan 28, 2025

    • methane-gapfill-ml

      Public
      Python codebase for gap-filling eddy covariance methane fluxes at FLUXNET-CH4 wetlands with machine learning.
      Python
      •
      Apache License 2.0
      •8•25•0•0•Updated Oct 22, 2024Oct 22, 2024

    • VisualCheXbert

      Public
      Addressing the Discrepancy Between Radiology Report Labels and Image Labels
      Python
      •
      Other
      •3•28•1•0•Updated Aug 5, 2024Aug 5, 2024

    • LaunchPad

      Public
      LaunchPad is a light-weighted Slurm job launcher designed for hyper-parameter search.
      slurmslurm-clusterautomlnnihypterparameter-optimization
      Python
      •2•11•0•1•Updated Aug 2, 2024Aug 2, 2024

    • well-pad-denver-permian

      Public
      Public repository for "Deep learning for detecting and characterizing oil and gas well pads in satellite imagery."
      Python
      •2•8•0•0•Updated Jun 17, 2024Jun 17, 2024

    • planet-parasol-demo

      Public
      A tool to explore the effects of stratospheric aerosol injection on the climate
      Python
      •0•12•0•0•Updated Jun 4, 2024Jun 4, 2024

    • ManyICL

      Public
      Python
      •
      MIT License
      •13•142•0•0•Updated May 23, 2024May 23, 2024

    • ed-monitor-data

      Public
      Python
      •0•11•2•0•Updated May 11, 2024May 11, 2024

    • Auto-Generate-WLs

      Public
      Code repository supporting the paper "Auto-Generating Weak Labels for Real & Synthetic Data to Improve Label-Scarce Medical Image Segmentation" - MIDL 2024
      medical-imagingsegment-anything
      Jupyter Notebook
      •
      MIT License
      •2•11•3•0•Updated Apr 29, 2024Apr 29, 2024

    • VetLLM

      Public
      Code for VetLLM paper
      Jupyter Notebook
      •
      MIT License
      •1•9•0•0•Updated Apr 22, 2024Apr 22, 2024

    • USat

      Public
      Python
      •
      MIT License
      •1•39•3•2•Updated Feb 22, 2024Feb 22, 2024

    • chexpert-labeler

      Public
      CheXpert NLP tool to extract observations from radiology reports.
      Python
      •
      MIT License
      •88•386•20•0•Updated Feb 3, 2023Feb 3, 2023

    • InterActive-Learning-Toolkit

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Nov 29, 2022Nov 29, 2022

    • nlc

      Public
      Neural Language Correction implemented on Tensorflow
      Python
      •69•156•7•3•Updated Oct 15, 2022Oct 15, 2022

    • ed-monitor-myocardial-injury

      Public
      Jupyter Notebook
      •
      MIT License
      •0•2•0•0•Updated Sep 25, 2022Sep 25, 2022

    • pytorch-examples

      Public
      Justin Johnson PyTorch Tutorial
      Python
      •
      MIT License
      •919•2•0•0•Updated Feb 20, 2022Feb 20, 2022

    • MoCo-CXR

      Public
      MoCo-based unsupervised training for Chest X-Ray Interpretation
      Python
      •7•45•3•0•Updated Jan 9, 2022Jan 9, 2022

    • selfsupervised-lungandheartsounds

      Public
      Python
      •5•18•1•0•Updated Nov 20, 2021Nov 20, 2021

    • CheXseg

      Public
      Code used in the paper "CheXseg: Combining Expert Annotations with DNN-generated Saliency Maps for X-ray Segmentation"
      Python
      •
      MIT License
      •3•13•1•0•Updated Oct 14, 2021Oct 14, 2021

    • MedAug

      Public
      Public release for MedAug
      Jupyter Notebook
      •
      MIT License
      •1•8•0•0•Updated Oct 8, 2021Oct 8, 2021

    • influenza-qtof

      Public
      Novel metabolomics approach combined with machine learning for the diagnosis of influenza from nasopharyngeal specimens
      Jupyter Notebook
      •2•3•0•0•Updated Jun 8, 2021Jun 8, 2021

    • Image-Downloader

      Public
      Download images from Google, Bing, Baidu. 谷歌、百度、必应图片下载.
      Python
      •
      MIT License
      •574•1•0•0•Updated Jun 2, 2021Jun 2, 2021

    • MedSelect

      Public
      Learns effective selective labeling strategies for medical images using deep reinforcement learning and meta learning
      Python
      •
      Apache License 2.0
      •3•25•0•0•Updated May 8, 2021May 8, 2021

    • disentanglement

      Public
      Official repository for our ICLR 2021 paper Evaluating the Disentanglement of Deep Generative Models with Manifold Topology
      Python
      •5•36•2•0•Updated Mar 22, 2021Mar 22, 2021

    • DLBCL-Morph

      Public
      DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep learning
      datasetmedical-imagingpathologysurvival-predictiondeep-learning
      Jupyter Notebook
      •10•36•2•0•Updated Dec 22, 2020Dec 22, 2020