Repositories list

• jupyter-workflow

  Public template
  This is a template repository to automatically turn your project directory into a published github website based on your jupyter notebook(s)

  CSS

  •0•0•0•0•Updated Aug 14, 2025Aug 14, 2025

• galapagos-2

  Public
  CSS

  •

  Apache License 2.0

  •0•0•0•0•Updated Jun 4, 2025Jun 4, 2025

• galapagos_website

  Public
  HTML

  •0•0•0•0•Updated May 22, 2025May 22, 2025

• smallmouth_public

  Public
  Code to accompany smallmouth adaptation manuscript.

  MIT License

  •0•2•0•0•Updated May 21, 2025May 21, 2025

• shad-genome

  Public
  HTML

  •0•0•0•0•Updated Mar 21, 2025Mar 21, 2025

• rkc

  Public
  Repo for Red King Crab data analysis

  HTML

  •0•0•0•0•Updated Mar 6, 2025Mar 6, 2025

• user-guide

  Public
  The repository of lab resources like computing, lab things, etc.

  MIT License

  •3•4•12•0•Updated Feb 6, 2025Feb 6, 2025

• genomic-data-analysis

  Public
  Pipelines for analyzing genomic or transcriptomic data

  Shell

  •8•13•2•0•Updated Feb 29, 2024Feb 29, 2024

• batch-effect

  Public
  Shell

  •1•6•0•0•Updated Jun 1, 2022Jun 1, 2022

• lcwgs-simulation

  Public
  Shell

  •4•17•13•0•Updated May 27, 2022May 27, 2022

• silverside-linkage-maps

  Public
  R

  •0•0•0•0•Updated Apr 5, 2022Apr 5, 2022

• data-processing

  Public
  Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis

  Shell

  •3•11•0•0•Updated Nov 23, 2021Nov 23, 2021

• silverside-simulation

  Public
  Slim

  •0•0•0•0•Updated Apr 15, 2021Apr 15, 2021

• NTRES6940-data-science

  Public
  Collaborative and Reproducible Data Science in R

  HTML

  •46•0•0•0•Updated Sep 10, 2020Sep 10, 2020