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    18 repositories

    • mirage

      Public
      Mixture model based Rare variant Analysis on Genes
      HTML
      •2•2•3•0•Updated Aug 18, 2025Aug 18, 2025

    • multigroup_ctwas

      Public
      multigroup version of cTWAS package
      R
      •
      Other
      •13•6•0•0•Updated Aug 16, 2025Aug 16, 2025

    • ctwas

      Public
      causal TWAS (cTWAS)
      R
      •
      MIT License
      •13•45•6•0•Updated Aug 16, 2025Aug 16, 2025

    • mapgen

      Public
      R package to perform gene mapping using functionally-informed genetic fine mapping
      R
      •
      Other
      •3•7•2•0•Updated Aug 12, 2025Aug 12, 2025

    • Lung_scMultiomics_paper

      Public
      0•0•0•0•Updated May 29, 2025May 29, 2025

    • singlegroup_ctwas

      Public
      package for the causal TWAS project
      R
      •
      Other
      •13•0•0•0•Updated Aug 13, 2024Aug 13, 2024

    • ctwas-paper

      Public
      Code related to analysis in the ctwas paper.
      HTML
      •0•5•1•0•Updated Jan 20, 2024Jan 20, 2024

    • GSFA

      Public
      R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening data.
      factor-analysisscrna-seq-analysisdifferential-expression-analysiscrispr-screen-analysissingle-cell
      C++
      •
      MIT License
      •2•22•5•1•Updated Oct 3, 2023Oct 3, 2023

    • GSFA_paper

      Public
      Analysis code for the GSFA manuscript "A novel Bayesian factor analysis method improves detection of genes and biological processes affected by perturbations in single-cell CRISPR screening"
      R
      •2•3•1•0•Updated Sep 26, 2023Sep 26, 2023

    • aFib_heart_atlas_mapgen_paper

      Public
      Code and data resources for aFib heart atlas paper
      R
      •1•5•0•0•Updated Jun 24, 2023Jun 24, 2023

    • heart_atlas

      Public
      heart atlas analysis in R
      R
      •6•0•0•0•Updated May 19, 2022May 19, 2022

    • RSSp

      Public
      Polygenic RSS
      R
      •
      GNU General Public License v3.0
      •0•0•4•0•Updated Apr 1, 2021Apr 1, 2021

    • lab-wiki

      Public
      Repository for documenting lab best practices
      Jupyter Notebook
      •2•4•8•0•Updated Jul 8, 2020Jul 8, 2020

    • ldsc

      Public
      LD Score Regression (LDSC)
      Python
      •
      GNU General Public License v3.0
      •361•0•0•0•Updated Mar 16, 2020Mar 16, 2020

    • m6A-ASE

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Dec 18, 2019Dec 18, 2019

    • sos-dockerfile-action

      Public
      github action for runing SOS
      Shell
      •
      MIT License
      •0•0•0•0•Updated Dec 17, 2019Dec 17, 2019

    • fusion_twas

      Public
      methods for functional summary-based imputation
      R
      •
      GNU General Public License v3.0
      •47•0•0•0•Updated Oct 1, 2019Oct 1, 2019

    • UK_Biobank_GWAS

      Public
      Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release
      Python
      •106•0•0•0•Updated May 3, 2018May 3, 2018