use setenv to avoid parallel-processx-conflict #2098
Workflow file for this run
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| --- | |
| # Github Actions workflow to analyze CmdStanR code, test coverage | |
| # yamllint disable rule:line-length | |
| on: | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| name: Test coverage | |
| permissions: read-all | |
| jobs: | |
| test-coverage: | |
| if: "! contains(github.event.head_commit.message, '[ci skip]')" | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - { os: windows-latest } | |
| - { os: ubuntu-latest } | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| NOT_CRAN: true | |
| steps: | |
| - name: cmdstan env vars | |
| run: | | |
| echo "CMDSTAN_PATH=${HOME}/.cmdstan" >> $GITHUB_ENV | |
| shell: bash | |
| - uses: n1hility/cancel-previous-runs@v3 | |
| with: | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| workflow: Test-coverage.yaml | |
| if: "!startsWith(github.ref, 'refs/tags/') && github.ref != 'refs/heads/master'" | |
| - uses: actions/checkout@v4 | |
| - uses: r-lib/actions/setup-r@v2 | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck, local::., any::covr, any::gridExtra, any::xml2 | |
| needs: coverage | |
| - name: Install cmdstan | |
| run: | | |
| cmdstanr::check_cmdstan_toolchain(fix = TRUE) | |
| cmdstanr::install_cmdstan(cores = 2) | |
| shell: Rscript {0} | |
| - name: Test coverage (Linux) | |
| if: runner.os == 'Linux' | |
| run: | | |
| cov <- covr::package_coverage( | |
| quiet = FALSE, | |
| clean = FALSE, | |
| install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package"), | |
| type = "tests" | |
| ) | |
| print(cov) | |
| covr::to_cobertura(cov) | |
| shell: Rscript {0} | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| - name: Test coverage (Windows) | |
| if: runner.os == 'Windows' | |
| run: | | |
| options(covr.gcov = 'C:/rtools44/mingw64/bin/gcov.exe'); | |
| cov <- covr::package_coverage( | |
| quiet = FALSE, | |
| clean = FALSE, | |
| install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package"), | |
| type = "tests", | |
| function_exclusions = "sample_mpi" | |
| ) | |
| print(cov) | |
| covr::to_cobertura(cov) | |
| shell: Rscript {0} | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| - uses: codecov/codecov-action@v5 | |
| with: | |
| # Fail if error if not on PR, or if on PR and token is given | |
| fail_ci_if_error: ${{ github.event_name != 'pull_request' || secrets.CODECOV_TOKEN }} | |
| files: ./cobertura.xml | |
| plugins: noop | |
| disable_search: true | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| - name: Show testthat output | |
| if: always() | |
| run: | | |
| ## -------------------------------------------------------------------- | |
| find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload test results | |
| if: failure() | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-test-failures | |
| path: ${{ runner.temp }}/package |