Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
-
Updated
Jul 4, 2025 - R
#
cancer-genome-atlas
Here are 8 public repositories matching this topic...
DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.
detection tumor cancer-genomics cancer-genome-atlas somatic-mutations tin cancer-variants tumor-in-normal
-
Updated
May 20, 2022 - Jupyter Notebook
Predicting chemosensitivity using gene expression
cancer cancer-genomics cancer-genome-atlas predictive-analysis chemoinformatics predictive-modeling predictive-analytics cancer-research prediction-model generalized-linear-models cancer-data chemogenomics
-
Updated
May 13, 2020 - R
Applying Machine Learning Ras, NF1, and TP53 Classifiers to PDX model gene expression
classifier machine-learning gene-expression cancer-genomics cancer-genome-atlas pdx pediatric-cancer machine-learning-ras ras-activation
-
Updated
Jul 9, 2019 - HTML
KRAB-ZNF explorer - expression of KRAB-ZNF- transcription factors in The Cancer Genome Atlas study
-
Updated
Jul 31, 2019 - HTML
Cancer data analysis on the JFCR39 dataset
python bioinformatics python3 cancer-genomics cancer-genome-atlas nmf non-negative-matrix-factorization
-
Updated
Sep 4, 2018 - Jupyter Notebook
python cloud bioinformatics r sql computational-biology tcga cancer-genomics cancer-genome-atlas gtex
-
Updated
Jun 23, 2018
-
Updated
Jun 24, 2018
Improve this page
Add a description, image, and links to the cancer-genome-atlas topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the cancer-genome-atlas topic, visit your repo's landing page and select "manage topics."