effective-population-size

Here are 3 public repositories matching this topic...

bguo068 / posseleff_simulations

Nextflow pipeline to assess the impact of positive selection on Identity by Descent (IBD)-based inferences, utilizing population genetic simulations and true IBD inferences.

population-structure positive-selection identity-by-descent nextflow-pipeline effective-population-size posseleff-paper true-ibd ibd-based-inferences population-genetic-simulations

Updated Feb 15, 2024
Python

tforest / deminfhelper

Star

Command line utility to assist pop. size inference.

population-size population-genetics effective-population-size

Updated Jul 21, 2025
Python

bguo068 / posseleff_empirical

Star

Nextflow pipeline for analyzing empirical WGS data for the effect of positive selection on IBD-based inference

metadata imputation population-structure deconvolution whole-genome-sequencing infomap plasmodium-falciparum multiple-infection empirical-data ibd-inference effective-population-size posseleff-paper

Updated Nov 19, 2024
Nextflow

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