trivial, testing is merging is still happening on origin #81
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name: peakScout | |
on: | |
push: | |
branches: | |
- main | |
jobs: | |
peakScout: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Checkout repository | |
uses: actions/checkout@v2 | |
- name: Set up Python | |
uses: actions/setup-python@v2 | |
with: | |
python-version: '3.9.12' | |
- name: Install dependencies | |
run: pip install polars numpy pandas openpyxl pyarrow | |
- name: Create executable | |
working-directory: src | |
run: chmod +x peakScout | |
- name: Add script directory to PATH | |
run: echo "${{ github.workspace }}/src" >> $GITHUB_PATH | |
- name: Remove previous tests | |
working-directory: test | |
run: bash remove_previous.sh | |
- name: Test decomposition | |
run: bash test/test_decomp.sh | |
- name: Test MACS2 peak2gene | |
run: bash test/test_peak2gene_MACS2.sh | |
- name: Test SEACR peak2gene | |
run: bash test/test_peak2gene_SEACR.sh | |
- name: Test BED6 peak2gene | |
run: bash test/test_peak2gene_BED6.sh | |
- name: Test MACS2 gene2peak | |
run: bash test/test_gene2peak_MACS2.sh | |
- name: Test SEACR gene2peak | |
run: bash test/test_gene2peak_SEACR.sh | |
- name: Test BED6 gene2peak | |
run: bash test/test_gene2peak_BED6.sh |