[WIP] Integrate weakly supervised NEON data #265

	name: Python package

	on:
	push:
	branches: [main]
	pull_request:
	branches: [main]

	jobs:
	ci:
	name: "CI setup"

	strategy:
	fail-fast: false
	matrix:
	python-version:
	- "3.12"
	- "3.11"
	os:
	- "ubuntu-latest"

	runs-on: "${{ matrix.os }}"

	# use bash everywhere
	defaults:
	run:
	shell: "bash -l {0}"

	steps:
	- name: "Checkout code"
	uses: "actions/checkout@v4"

	- name: Install apt dependencies
	run: \|
	sudo apt-get update
	sudo apt-get install -y libgeos-dev pandoc

	- name: Install uv
	uses: astral-sh/setup-uv@v5
	with:
	python-version: ${{ matrix.python-version }}

	- name: Install Python dependencies
	run: \|
	uv sync --all-extras --dev
	uv pip install nbqa

	- name: Verify nbqa installation
	run: uv run nbqa --version

	- name: Run pytest for everything but test_polygons
	run: uv run pytest -v --ignore-glob="release"

	- name: Check style
	run: uv run yapf -d --recursive src/milliontrees/ --style=.style.yapf

	- name: Check notebook style
	run: uv run nbqa yapf --in-place docs/examples/*.ipynb --style=.style.yapf

	# - name: Check notebook build
	# run: uv run pytest --nbmake docs/*.ipynb

	- name: Run docformatter
	run: uv run docformatter --check --wrap-summaries 100 --wrap-descriptions 100 --recursive src/milliontrees/

	- name: Test Docs
	run: \|
	cd docs && make clean && make html SPHINXOPTS="-W"

	- name: Test and check build artifacts
	run: \|
	uv pip install build && uv run python -m build && uv run twine check dist/*

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