Upgrade to Snakemake version 9#191

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fgypas wants to merge 4 commits intodevfrom

check_snakemake_9

Commits on May 6, 2025

Update snakemake to version 9 and add dependencies
fgypas
committed

Commits on Jul 10, 2025

Update environment yml
fgypas
committed

Commits on Jul 13, 2025

Update env
fgypas
committed

Commits on Jul 20, 2025

Update cluster execution
fgypas
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