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kraken: database ("/public/home/iuedwc/KRAKEN_DB") does not contain necessary file database.kdb

Status: Open.

#307 In jenniferlu717/Bracken;

· XMChao234 opened on Aug 15, 2025

combine_bracken_outputs.py Fails for different taxa IDs with identical Genus names

Status: Open.

#304 In jenniferlu717/Bracken;

· ccolvinmmiv opened on Jun 18, 2025

Taxonomic classification of amplicon sequence variants (ASVs) using Kraken 2 and Bracken

Status: Open.

#301 In jenniferlu717/Bracken;

· niknit96 opened on Feb 28, 2025

Error: AttributeError: 'NoneType' object has no attribute 'level_num'

Status: Open.

#297 In jenniferlu717/Bracken;

· marco315176 opened on Jan 22, 2025

bracken-build does not recognize kraken2 db files though they exist

Status: Open.

#295 In jenniferlu717/Bracken;

· balags1 opened on Dec 13, 2024

The blank value problem in the integration of multiple samples

Status: Open.

#294 In jenniferlu717/Bracken;

· molinfzlvvv opened on Dec 3, 2024

Bracken not redistributing reads as expected?

Status: Open.

#293 In jenniferlu717/Bracken;

· JessF298 opened on Dec 2, 2024

flag to include unclassified reads

Status: Open.

#292 In jenniferlu717/Bracken;

· alexandrabast opened on Nov 29, 2024

Change Bracken help text for default threshold

Status: Open.

#290 In jenniferlu717/Bracken;

· JonathanAbrahams1337 opened on Nov 21, 2024

line 179: /usr/bin/kraken2: Argument list too long

Status: Open.

#289 In jenniferlu717/Bracken;

· jd-apha opened on Nov 19, 2024

<code>IndexError: string index out of range</code> for clade Bacteria with empty level

Status: Open.

#284 In jenniferlu717/Bracken;

· fluhus opened on Oct 20, 2024

Bracken+Krakenuniq- ERR-line 225: 1238747 Segmentation fault (core dumped)

Status: Open.

#283 In jenniferlu717/Bracken;

· BhawnaY16 opened on Oct 18, 2024