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@blowekamp blowekamp commented Jun 25, 2024

In the generate_czi_imageset subflow, allow the dask array computations in HedwigZARRImage to reuse Prefect's Dask task scheduler with all the workers for the node.

Depends on niaid/tomojs-pytools#108 and #479

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  • List of changes
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This PR doesn't introduce any:

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  • tests

@blowekamp blowekamp force-pushed the use_pytools_compute_args branch from 4f6c588 to 6db4e00 Compare June 25, 2024 14:29
@blowekamp blowekamp changed the title Improve HedwigZARRImages performanve in CZI flow Improve HedwigZARRImages performance in CZI flow Jun 27, 2024
@blowekamp blowekamp marked this pull request as ready for review November 5, 2024 14:10
@philipmac
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There was an update to pytools which changed the default to use a restricted number of local dask threads. This above PR, allows this prefect task to use all threads.

@blowekamp blowekamp requested a review from philipmac November 5, 2024 14:36
In the generate_czi_imageset subflow, allow the dask array
computations in HedwigZARRImage to reuse Prefect's Dask task
scheduler with all the workers for the node.
@philipmac philipmac force-pushed the use_pytools_compute_args branch from 6db4e00 to 66486ef Compare June 3, 2025 13:41
@philipmac philipmac merged commit c8769cb into main Jun 10, 2025
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@philipmac philipmac deleted the use_pytools_compute_args branch June 10, 2025 20:57
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2 participants