Search results

Time for pipeline as part of the final log

Status: Open.

#35 In theislab/mubind-benchmark;

· ilibarra opened on Feb 16, 2023

Include in pipeline fits with sequence bias kernels i.e. 4x1 or 4x2 kernels, without extension.

prio:high

Status: Open.

#32 In theislab/mubind-benchmark;

· ilibarra opened on Jan 15, 2023

Different optimizers

prio:low

Status: Open.

#31 In theislab/mubind-benchmark;

· ilibarra opened on Jan 13, 2023

Pairwise predictions with related proteins

prio:medium

Status: Open.

#29 In theislab/mubind-benchmark;

· ilibarra opened on Jan 11, 2023

comparison with motif deviations from chromvar

Status: Open.

#28 In theislab/mubind-benchmark;

· ilibarra opened on Jan 10, 2023

input/output by rule into directories with same name

prio:high

Status: Open.

#26 In theislab/mubind-benchmark;

· ilibarra opened on Jan 3, 2023

Comparison of learned/aggregated filters with CisBP, JASPAR, and/or Archetypes

prio:high

Status: Open.

#24 In theislab/mubind-benchmark;

· ilibarra opened on Jan 2, 2023

Comparison of R2s between mubind and ProBound

prio:medium

Status: Open.

#23 In theislab/mubind-benchmark;

· ilibarra opened on Dec 23, 2022

refine_models step

prio:high

Status: Open.

#21 In theislab/mubind-benchmark;

· ilibarra opened on Dec 19, 2022

rule reduce_filters_dataset after fit_model.py

prio:high

Status: Open.

#20 In theislab/mubind-benchmark;

· ilibarra opened on Dec 19, 2022

Modify output format for snakemake output

Status: Open.

#19 In theislab/mubind-benchmark;

· ilibarra opened on Dec 17, 2022

Total counts per column in each query

Status: Open.

#18 In theislab/mubind-benchmark;

· ilibarra opened on Dec 17, 2022