0568ae3

update benchmark

stemangiola Oct 7, 2021

9e46ba8

fix devs and create counts function

stemangiola Oct 8, 2021

6fcfbb1

set seed for simulation

stemangiola Oct 8, 2021

4c06cad

make model more stable

stemangiola Oct 11, 2021

6962e2d

use QR decomposition and add utilities

stemangiola Oct 11, 2021

cd84187

fix for formula with 2+ covariates

stemangiola Oct 12, 2021

8346a8d

add figures article

stemangiola Oct 14, 2021

da9a912

update plots

stemangiola Oct 16, 2021

4298644

detect outliers without variance association + update figures

stemangiola Oct 18, 2021

055cc16

update novel result

stemangiola Oct 18, 2021

1ce5345

update figures

stemangiola Oct 21, 2021

32502bf

made sure variational approximate MCMC, the means match the sd are un…

stemangiola Oct 24, 2021

e42cee6

approximate variational by default

stemangiola Oct 24, 2021

7866728

Merge pull request #31 from stemangiola/non-centered-parameterisation

stemangiola Oct 24, 2021

bb39b21

Merge branch 'master' into dev

stemangiola Oct 24, 2021

d20a1ed

small fix

stemangiola Oct 24, 2021

c9a9ee9

no variational default

stemangiola Oct 24, 2021

df21d14

docs

stemangiola Oct 24, 2021

3eaffe9

force full MCMC for last inference

stemangiola Oct 25, 2021

8acdfc5

Merge pull request #33 from stemangiola/non-centered-parameterisation

stemangiola Oct 25, 2021

cd83bde

approximate by default

stemangiola Oct 25, 2021

6bc08b2

Merge branch 'dev' of github.com:stemangiola/sccomp into dev

stemangiola Oct 25, 2021

42aab80

update approximation options

stemangiola Oct 25, 2021

a37f990

change tests

stemangiola Oct 25, 2021

05b1985

Merge pull request #32 from stemangiola/dev

stemangiola Oct 25, 2021

0a90dd2

fix dependencies

stemangiola Oct 25, 2021

0e2a512

update benchmark with rlm with proper convergence

stemangiola Oct 26, 2021

caff0cb

add estimate for simulation

stemangiola Oct 29, 2021

af66665

add estimate argument

stemangiola Oct 29, 2021

efa09ab

update equations

stemangiola Nov 5, 2021

d9db0f8

added machinery

stemangiola Nov 10, 2021

a5a06a8

update dev plotting files

stemangiola Nov 10, 2021

68374d9

Merge pull request #36 from stemangiola/allow-no-prior

stemangiola Nov 11, 2021

53e88a0

implemented logit linear multinomial model

stemangiola Nov 12, 2021

3573b63

use new simulation

stemangiola Nov 12, 2021

98b71bd

fix for intercept-only models

stemangiola Nov 12, 2021

2f06788

update figures

stemangiola Nov 16, 2021

cebeb8c

update model for Dirichlet approximation

stemangiola Nov 16, 2021

c345a9d

Merge pull request #38 from stemangiola/simulate-logitlinear

stemangiola Nov 16, 2021

3c1d2ba

update figures

stemangiola Nov 17, 2021

72c3f5e

Merge branch 'dev' of github.com:stemangiola/sccomp into dev

stemangiola Nov 17, 2021

db09f23

update README

stemangiola Nov 17, 2021

4b92342

update latex equations pre-drop priors

stemangiola Nov 18, 2021

e3d0064

dropped tidy backend

stemangiola Nov 22, 2021

ce64435

update script

stemangiola Nov 29, 2021

b3ba1b7

fix simulation for Castiel

stemangiola Nov 30, 2021

c66c716

fix dirichlet

stemangiola Dec 1, 2021

005000b

docs

stemangiola Dec 1, 2021

0754564

update scripts

stemangiola Dec 1, 2021

4c52af9

complete machinery

stemangiola Dec 1, 2021

12abdb8

merge allow-no-prior

stemangiola Dec 1, 2021

26d6c61

merge dev

stemangiola Dec 1, 2021

95420c6

update mean variability association figure

stemangiola Dec 5, 2021

849c903

fix model details

stemangiola Dec 7, 2021

7851fb0

fix dirichlet model

stemangiola Dec 13, 2021

942b35d

update formulae and figures

stemangiola Dec 13, 2021

a068df1

update benchmark and images

stemangiola Dec 15, 2021

03e18b2

update variability framework

stemangiola Dec 19, 2021

976264a

fixes and update figures

stemangiola Dec 20, 2021

2e9dea9

added formula_variability

stemangiola Dec 20, 2021

b662067

fix bug diff variability

stemangiola Dec 23, 2021

87176ef

update novel results

stemangiola Dec 23, 2021

4721f34

add fdr and change variability threshold to 0.2

stemangiola Dec 23, 2021

261b999

update dirichlet model

stemangiola Dec 23, 2021

d095064

update code

stemangiola Dec 24, 2021

fc22175

fix model and scripts. Check for QR decomposition

stemangiola Jan 6, 2022

391e739

update figure images

stemangiola Jan 6, 2022

b5b1081

fix tests with logit multinomial

stemangiola Jan 18, 2022

bcd2c52

update simulations and figures

stemangiola Jan 23, 2022

25b55c1

update output

stemangiola Jan 24, 2022

5ede211

Merge pull request #40 from stemangiola/reformat-results

stemangiola Jan 24, 2022

768450f

add summary plot

stemangiola Jan 25, 2022

2f95b60

use beta instead of beta_raw

stemangiola Jan 25, 2022

a8b114c

fix plots

stemangiola Jan 25, 2022

5469ca9

fix plot

stemangiola Jan 25, 2022

8f07ea7

merge dev

stemangiola Jan 25, 2022

911d527

update figures and README

stemangiola Jan 25, 2022

f5d8926

Merge branch 'master' into dev

stemangiola Jan 28, 2022

52b66d7

formulae before diff variability pivot

stemangiola Jan 29, 2022

996ec0e

update formula

stemangiola Jan 29, 2022

b0de7ca

update plotting and figures

stemangiola Jan 31, 2022

37ec018

update equations

stemangiola Feb 2, 2022

846d1dd

update formulae

stemangiola Feb 2, 2022

ccafd90

update figures

stemangiola Feb 2, 2022

5141a00

update plots and README

stemangiola Feb 2, 2022

99ef64c

pull dev

stemangiola Feb 2, 2022

56be50a

update files

stemangiola Feb 2, 2022

6cfefe6

update README

stemangiola Feb 2, 2022

fe9f634

git ignore

stemangiola Feb 3, 2022

5b626c1

update build ignore

stemangiola Feb 3, 2022

e7a455a

name figure scripts

stemangiola Feb 4, 2022

b7bc1a0

reformat git ignore

stemangiola Feb 4, 2022

5ce4c80

Merge branch 'dev' of github.com:stemangiola/sccomp into dev

stemangiola Feb 8, 2022

766349d

Merge pull request #43 from stemangiola/master

stemangiola Feb 8, 2022

1ba467f

Merge pull request #51 from stemangiola/master

stemangiola Jun 12, 2022