Add CI workflow to run pytest- add apeer library -no-deps #3

	name: CI — tests

	on:
	push:
	branches:
	- '**' # run on pushes to any branch
	pull_request:
	branches:
	- main # run on PRs targeting main

	jobs:
	test:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python: [3.8] # add other versions if wanted, e.g. 3.9, 3.10
	steps:
	- name: Checkout repo
	uses: actions/checkout@v4

	- name: Set up Python ${{ matrix.python }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python }}

	- name: Cache pip
	uses: actions/cache@v4
	with:
	path: ~/.cache/pip
	key: ${{ runner.os }}-pip-${{ hashFiles('*/requirements.txt') }}
	restore-keys: \|
	${{ runner.os }}-pip-

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install apeer-ometiff-library --no-deps
	if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
	# if you have dev requirements for testing, install them too
	if [ -f requirements-dev.txt ]; then pip install -r requirements-dev.txt; fi
	# install package in editable mode so tests import src/ correctly
	pip install -e .

	- name: Run pytest (produce junit xml)
	run: \|
	mkdir -p test-results
	pytest -q --junitxml=test-results/junit.xml \|\| true
	continue-on-error: false

	- name: Upload pytest junit xml
	uses: actions/upload-artifact@v4
	with:
	name: junit-xml
	path: test-results/junit.xml

	- name: Upload test logs (stdout/stderr)
	if: failure()
	uses: actions/upload-artifact@v4
	with:
	name: pytest-logs
	path: \|
	pytest.log
	test-results/junit.xml

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