Repositories list

• CVL-Microbiome-HIV-Discordant-Shedding

  Public
  R

  •0•0•0•0•Updated Jun 23, 2025Jun 23, 2025

• BatCoVDiscovery

  Public
  A bioinformatics workflow for novel bat coronaviruses discovery.

  hpcslurmmetagenomics+ 4blastspadesvirus-discoverycoronavirus

  Shell

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Jun 12, 2025Jun 12, 2025

• LindaKizazi-NP-COVID-19-HIV

  Public
  R

  •0•0•0•0•Updated Feb 23, 2024Feb 23, 2024

• Wastewater-Genomic-Surveillance-Manuscript

  Public
  R

  •0•0•1•0•Updated Feb 2, 2024Feb 2, 2024

• Linda-Kizazi-SARS-CoV-2-and-HIV

  Public
  R

  •0•0•0•0•Updated Feb 2, 2024Feb 2, 2024

• BK-Kidney

  Public
  BK

  R

  •0•0•0•0•Updated Nov 20, 2023Nov 20, 2023

• BLAST

  Public
  Python

  •0•0•0•0•Updated Sep 20, 2023Sep 20, 2023

• Variant_calling

  Public
  Python

  •0•0•0•0•Updated Sep 20, 2023Sep 20, 2023

• Streamlit_dashboard

  Public
  Python

  •0•0•0•0•Updated Sep 20, 2023Sep 20, 2023

• NCBI

  Public
  Python

  •0•0•0•0•Updated Sep 20, 2023Sep 20, 2023

• NGS_pipeline_automation

  Public
  Python

  •0•0•0•0•Updated Sep 20, 2023Sep 20, 2023

• NGS_pipeline_development

  Public
  Python

  •0•0•0•0•Updated Sep 20, 2023Sep 20, 2023

• GISAID

  Public
  This repository contains files associated with processing GISAID files.

  Python

  •0•0•0•0•Updated Sep 9, 2023Sep 9, 2023

• Absolute-Q

  Public
  Python

  •0•0•0•0•Updated Sep 8, 2023Sep 8, 2023

• NEC-Virome

  Public
  Shell

  •1•6•0•0•Updated Mar 20, 2023Mar 20, 2023

• Spike_mutation_tracker

  Public
  Python

  •0•0•0•0•Updated Feb 21, 2023Feb 21, 2023

• Network_analysis

  Public
  Python

  •0•1•0•0•Updated Sep 6, 2022Sep 6, 2022

• CVL_UofA

  Public
  R

  •0•0•0•0•Updated Feb 22, 2022Feb 22, 2022

• GeneDropout

  Public
  R

  •0•0•0•0•Updated Sep 16, 2021Sep 16, 2021

• mafft

  Public
  Align multiple amino acid or nucleotide sequences.

  C

  •

  Other

  •9•0•0•0•Updated Sep 17, 2020Sep 17, 2020